bnc2 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-953157 T145641_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bnc1
M10340_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BNC1_01 		0.798 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002935715 C2H2 ZF 431 453
XP_002935715 C2H2 ZF 458 480

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00013p00252260 Amborella trichopoda AMTR_s00013p00252260 N 0.000
AT4G13040 Arabidopsis thaliana AT4G13040 N 0.000
BGIOSGA008254 Oryza indica BGIOSGA008254 N 0.000
Bo11579s010 Brassica oleracea Bo11579s010 N 0.000
Bo8g033910 Brassica oleracea Bo8g033910 N 0.000
Bostr.2021s0045 Boechera stricta Bostr.2021s0045 N 0.000
Bra034895 Brassica rapa Bra034895 N 0.000
BRADI3G43822 Brachypodium distachyon BRADI3G43822 N 0.000
Cagra.2997s0002 Capsella grandiflora Cagra.2997s0002 N 0.000
Carubv10005663m.g Capsella rubella Carubv10005663m.g N 0.000
cassava38073.valid.m1 Manihot esculenta cassava38073.valid.m1 N 0.000
cassava6828.valid.m1 Manihot esculenta cassava6828.valid.m1 N 0.000
Ca_11707 Cicer arietinum Ca_11707 N 0.000
Ca_17230 Cicer arietinum Ca_17230 N 0.000
chr1.LjT46N10.100.nd Lotus japonicus chr1.LjT46N10.100.nd N 0.000
chr3.CM0423.200.nd Lotus japonicus chr3.CM0423.200.nd N 0.000
Ciclev10021891m.g Citrus clementina Ciclev10021891m.g N 0.000
Cla002744 Citrullus lanatus Cla002744 N 0.000
Cla015151 Citrullus lanatus Cla015151 N 0.000
Cucsa.078000 Cucumis sativus Cucsa.078000 N 0.000
Cucsa.150110 Cucumis sativus Cucsa.150110 N 0.000
estExt_fgenesh1_pg.C_930051 Physcomitrella patens estExt_fgenesh1_pg.C_930051 N 0.000
Eucgr.K02136 Eucalyptus grandis Eucgr.K02136 N 0.000
evm.TU.supercontig_21.106 Carica papaya evm.TU.supercontig_21.106 N 0.000
e_gw1.317.27.1 Physcomitrella patens e_gw1.317.27.1 N 0.000
GLYMA08G46250 Glycine max GLYMA08G46250 N 0.000
GLYMA18G33460 Glycine max GLYMA18G33460 N 0.000
Gorai.001G105100 Gossypium raimondii Gorai.001G105100 N 0.000
Gorai.001G188300 Gossypium raimondii Gorai.001G188300 N 0.000
Gorai.001G231300 Gossypium raimondii Gorai.001G231300 N 0.000
Gorai.007G156300 Gossypium raimondii Gorai.007G156300 N 0.000
GSMUA_Achr6G06510_001 Musa acuminata GSMUA_Achr6G06510_001 N 0.000
GSMUA_Achr8G00300_001 Musa acuminata GSMUA_Achr8G00300_001 N 0.000
GSMUA_Achr9G01590_001 Musa acuminata GSMUA_Achr9G01590_001 N 0.000
LPERR02G13930 Leersia perrieri LPERR02G13930 N 0.000
Lus10011836.g Linum usitatissimum Lus10011836.g N 0.000
Lus10022769.g Linum usitatissimum Lus10022769.g N 0.000
MDP0000129941 Malus domestica MDP0000129941 N 0.000
MDP0000300382 Malus domestica MDP0000300382 N 0.000
MDP0000675982 Malus domestica MDP0000675982 N 0.000
mgf003491m Mimulus guttatus mgf003491m N 0.000
mgf003727m Mimulus guttatus mgf003727m N 0.000
mgf007349m Mimulus guttatus mgf007349m N 0.000
MTR_7g055857 Medicago truncatula MTR_7g055857 N 0.000
MTR_8g012655 Medicago truncatula MTR_8g012655 N 0.000
OB02G25330 Oryza brachyantha OB02G25330 N 0.000
OBART02G17450 Oryza barthii OBART02G17450 N 0.000
OGLUM02G17700 Oryza glumaepatula OGLUM02G17700 N 0.000
OLONG_009588 Oryza longistaminata OLONG_009588 N 0.000
ONIVA02G18870 Oryza nivara ONIVA02G18870 N 0.000
OPUNC02G15530 Oryza punctata OPUNC02G15530 N 0.000
orange1.1g025914m.g Citrus sinensis orange1.1g025914m.g N 0.000
ORGLA02G0152600 Oryza glaberrima ORGLA02G0152600 N 0.000
ORUFI02G18290 Oryza rufipogon ORUFI02G18290 N 0.000
OS02G0499000 Oryza sativa OS02G0499000 N 0.000
Pavir.Aa01947 Panicum virgatum Pavir.Aa01947 N 0.000
Pavir.J28064 Panicum virgatum Pavir.J28064 N 0.000
PGSC0003DMG400017485 Solanum tuberosum PGSC0003DMG400017485 N 0.000
PK01824.1 Cannabis sativa PK01824.1 N 0.000
Pm020315 Prunus mume Pm020315 N 0.000
POPTR_0002s24750 Populus trichocarpa POPTR_0002s24750 N 0.000
PRUPE_ppa011812mg Prunus persica PRUPE_ppa011812mg N 0.000
Sb04g020150 Sorghum bicolor Sb04g020150 N 0.000
SELMODRAFT_420254 Selaginella moellendorffii SELMODRAFT_420254 N 0.000
Si018306m.g Setaria italica Si018306m.g N 0.000
Solyc09g059510.2 Solanum lycopersicum Solyc09g059510.2 N 0.000
TCM_002835 Theobroma cacao TCM_002835 N 0.000
Thhalv10026242m.g Eutrema salsugineum Thhalv10026242m.g N 0.000
Traes_6AL_13895C140 Triticum aestivum Traes_6AL_13895C140 N 0.000
Traes_6DS_43372C0A6 Triticum aestivum Traes_6DS_43372C0A6 N 0.000
VIT_00s0184g00010 Vitis vinifera VIT_00s0184g00010 N 0.000