ENSLOCG00000016539 (Lepisosteus oculatus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSLOCG00000016539 T164609_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.864 0.864
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.864 0.864
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000020425 CSD 31 103

Links

Other CSD family TFs
Other Lepisosteus oculatus TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002277 Calypte anna Aan_R002277 I 0.788
Aan_R005866 Calypte anna Aan_R005866 I 0.788
Aan_R007025 Calypte anna Aan_R007025 I 0.864
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.864
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.892
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.788
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.892
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.788
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.864
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.892
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.773
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.864
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.818
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.773
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.803
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.788
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.864
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.773
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.773
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.773
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.864
LIN28B Canis familiaris ENSCAFG00000003598 I 0.864
LIN28A Canis familiaris ENSCAFG00000012488 I 0.773
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.864
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.864
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.773
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.742
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.879
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.758
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.773
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.836
LIN28A Danio rerio ENSDARG00000004328 I 0.773
lin28a Danio rerio ENSDARG00000016999 I 0.773
lin28b Danio rerio ENSDARG00000052511 I 0.803
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.773
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.864
LIN28A Equus caballus ENSECAG00000020267 I 0.773
LIN28B Equus caballus ENSECAG00000020994 I 0.864
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.848
LIN28B Echinops telfairi ENSETEG00000015340 I 0.848
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.788
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.864
LIN28B Felis catus ENSFCAG00000005058 I 0.864
LIN28A Felis catus ENSFCAG00000012810 I 0.773
LIN28A Homo sapiens ENSG00000131914 I 0.773
LIN28B Homo sapiens ENSG00000187772 D 0.864
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.773
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.818
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.758
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.788
LIN28B Gallus gallus ENSGALG00000026761 I 0.833
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.864
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.773
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.803
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.803
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.769
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.788
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.848
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.773
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.864
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.788
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.773
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.788
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.864
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.773
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.864
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.864
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.788
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.879
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.864
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.773
Lin28a Mus musculus ENSMUSG00000050966 I 0.773
Lin28b Mus musculus ENSMUSG00000063804 I 0.864
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.773
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.864
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.848
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.754
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.773
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.864
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.773
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.836
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.773
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.773
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.773
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.864
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.818
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.773
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.773
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.864
LIN28B Oryzias latipes ENSORLG00000012891 I 0.818
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.788
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.773
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.864
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.773
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.788
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.803
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.773
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.864
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.879
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.773
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.864
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.864
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.773
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.864
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.773
LIN28B Sorex araneus ENSSARG00000008374 I 0.864
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I 0.774
LIN28A Sus scrofa ENSSSCG00000003557 I 0.773
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.864
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.864
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.773
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.892
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.864
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.727
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.818
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.788
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.818
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.727
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.864
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.773
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.773
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.864
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.773
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.803
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.773
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.892
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.864
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.773
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.836
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.879
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.773
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.879
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.864
lin28a Xenopus tropicalis XB-GENE-491384 I 0.803
lin28a.S Xenopus laevis XB-GENE-866059 I 0.803
yakG040859 Bos grunniens yakG040859 I 0.788