dmd-3 (Caenorhabditis elegans)
DM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00751 (DM) IPR001275 WBGene00012832 T169436_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
dmd-3
M00658_2.00		 Caenorhabditis elegans
NNWGTWDN
NHWACWNN		 PBM
Narasimhan et al.(2015)
pTH10638		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CBG09413
M01924_2.00 		Caenorhabditis briggsae
AATGTTTC
GAAACATT		 PBM
Weirauch et al.(2014)
pTH8330 		0.918 0.745
WUBG_11979
M01922_2.00 		Wuchereria bancrofti
ATGTWTCA
TGAWACAT		 PBM
Weirauch et al.(2014)
pTH9296 		0.917 0.766
Bm2567
M01923_2.00 		Brugia malayi
NNNWGTTKHN
NDMAACWNNN		 PBM
Weirauch et al.(2014)
pTH9246 		0.914 0.766
dmd-10
M00657_2.00 		Caenorhabditis elegans
AWTGTTTC
GAAACAWT		 PBM
Narasimhan et al.(2015)
pTH9142 		0.914 0.745
CBN06605
M01925_2.00 		Caenorhabditis brenneri
NWGTWKN
NMWACWN		 PBM
Weirauch et al.(2014)
pTH9247 		0.909 0.745
CJA05633_CONSTRUCT
M01936_2.00 		PBM CONSTRUCTS
NWGTWDN
NHWACWN		 PBM
Weirauch et al.(2014)
pTH9344 		0.909 0.745
For this family, TFs with SR scores > 0.845 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00658_2.00 DM 19 65

DNA Binding Domains

Protein ID Domain From To Sequence
Y43F8C.10a DM 15 60
Y43F8C.10a DM 113 159
Y43F8C.10b DM 19 65

Links

Other DM family TFs
Other Caenorhabditis elegans TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30055.m001588 Ricinus communis 30055.m001588 N
anac061 Arabidopsis lyrata Al_scaffold_0005_1163 N
Aquca_005_00168 Aquilegia coerulea Aquca_005_00168 N
anac061 Arabidopsis thaliana AT3G44350 N
NAC090 Arabidopsis thaliana AT5G22380 N
BGIOSGA037019 Oryza indica BGIOSGA037019 N
Bo2g023870 Brassica oleracea Bo2g023870 N
Bo3g016870 Brassica oleracea Bo3g016870 N
Bo3g122200 Brassica oleracea Bo3g122200 N
Bo3g123480 Brassica oleracea Bo3g123480 N
Bo9g148540 Brassica oleracea Bo9g148540 N
Bostr.0556s0732 Boechera stricta Bostr.0556s0732 N
Bostr.26527s0039 Boechera stricta Bostr.26527s0039 N
Bra002408 Brassica rapa Bra002408 N
Bra006624 Brassica rapa Bra006624 N
Bra019442 Brassica rapa Bra019442 N
Bra019459 Brassica rapa Bra019459 N
Cagra.0846s0014 Capsella grandiflora Cagra.0846s0014 N
Cagra.2192s0006 Capsella grandiflora Cagra.2192s0006 N
Carubv10001788m.g Capsella rubella Carubv10001788m.g N
Carubv10017870m.g Capsella rubella Carubv10017870m.g N
cassava13394.valid.m1 Manihot esculenta cassava13394.valid.m1 N
cassava14235.m1 Manihot esculenta cassava14235.m1 N
cassava15688.m1 Manihot esculenta cassava15688.m1 N
cassava32867.m1 Manihot esculenta cassava32867.m1 N
Ca_00818 Cicer arietinum Ca_00818 N
Ciclev10029032m.g Citrus clementina Ciclev10029032m.g N
Cla008777 Citrullus lanatus Cla008777 N
Cla018691 Citrullus lanatus Cla018691 N
Cucsa.083530 Cucumis sativus Cucsa.083530 N
Cucsa.185760 Cucumis sativus Cucsa.185760 N
Eucgr.A02635 Eucalyptus grandis Eucgr.A02635 N
Eucgr.A02636 Eucalyptus grandis Eucgr.A02636 N
Eucgr.A02639 Eucalyptus grandis Eucgr.A02639 N
Eucgr.C02446 Eucalyptus grandis Eucgr.C02446 N
Eucgr.I00583 Eucalyptus grandis Eucgr.I00583 N
Eucgr.I00587 Eucalyptus grandis Eucgr.I00587 N
Eucgr.J00505 Eucalyptus grandis Eucgr.J00505 N
Eucgr.J00508 Eucalyptus grandis Eucgr.J00508 N
Eucgr.J00509 Eucalyptus grandis Eucgr.J00509 N
Eucgr.J00511 Eucalyptus grandis Eucgr.J00511 N
Eucgr.J00512 Eucalyptus grandis Eucgr.J00512 N
Eucgr.J00513 Eucalyptus grandis Eucgr.J00513 N
Eucgr.J00514 Eucalyptus grandis Eucgr.J00514 N
Eucgr.J00516 Eucalyptus grandis Eucgr.J00516 N
Eucgr.J00517 Eucalyptus grandis Eucgr.J00517 N
Eucgr.J00518 Eucalyptus grandis Eucgr.J00518 N
Eucgr.J00519 Eucalyptus grandis Eucgr.J00519 N
Eucgr.J00520 Eucalyptus grandis Eucgr.J00520 N
evm.TU.supercontig_195.14 Carica papaya evm.TU.supercontig_195.14 N
F775_13455 Aegilops tauschii F775_13455 N
anac090 Arabidopsis lyrata fgenesh2_kg.6__2228__AT5G22380.1 N
gene21734-v1.0-hybrid Fragaria vesca gene21734-v1.0-hybrid N
GLYMA03G35570 Glycine max GLYMA03G35570 N
GLYMA12G31150 Glycine max GLYMA12G31150 N
GLYMA13G39160 Glycine max GLYMA13G39160 N
GLYMA19G38211 Glycine max GLYMA19G38211 N
Gorai.001G122800 Gossypium raimondii Gorai.001G122800 N
Gorai.002G238300 Gossypium raimondii Gorai.002G238300 N
GRMZM2G439903 Zea mays GRMZM2G439903 N
GRMZM2G465835 Zea mays GRMZM2G465835 N
GSMUA_Achr10G04720_001 Musa acuminata GSMUA_Achr10G04720_001 N
GSMUA_Achr6G19400_001 Musa acuminata GSMUA_Achr6G19400_001 N
GSMUA_Achr8G01410_001 Musa acuminata GSMUA_Achr8G01410_001 N
GSMUA_Achr9G29750_001 Musa acuminata GSMUA_Achr9G29750_001 N
LPERR11G02950 Leersia perrieri LPERR11G02950 N
Lus10004846.g Linum usitatissimum Lus10004846.g N
Lus10020643.g Linum usitatissimum Lus10020643.g N
MDP0000130797 Malus domestica MDP0000130797 N
MDP0000205938 Malus domestica MDP0000205938 N
MDP0000759504 Malus domestica MDP0000759504 N
MLOC_60153 Hordeum vulgare MLOC_60153 N
MTR_2g086690 Medicago truncatula MTR_2g086690 N
MTR_7g105170 Medicago truncatula MTR_7g105170 N
OB12G13350 Oryza brachyantha OB12G13350 N
OBART12G03440 Oryza barthii OBART12G03440 N
OGLUM12G04110 Oryza glumaepatula OGLUM12G04110 N
ONIVA12G03060 Oryza nivara ONIVA12G03060 N
OPUNC12G03240 Oryza punctata OPUNC12G03240 N
orange1.1g023996m.g Citrus sinensis orange1.1g023996m.g N
ORGLA12G0033100 Oryza glaberrima ORGLA12G0033100 N
OS12G0156100 Oryza sativa OS12G0156100 N
Pavir.J04751 Panicum virgatum Pavir.J04751 N
Pavir.J36282 Panicum virgatum Pavir.J36282 N
PGSC0003DMG400026332 Solanum tuberosum PGSC0003DMG400026332 N
PK27925.1 Cannabis sativa PK27925.1 N
Pm001403 Prunus mume Pm001403 N
POPTR_0001s22630 Populus trichocarpa POPTR_0001s22630 N
PRUPE_ppa010337mg Prunus persica PRUPE_ppa010337mg N
SapurV1A.0450s0140 Salix purpurea SapurV1A.0450s0140 N
SapurV1A.1671s0050 Salix purpurea SapurV1A.1671s0050 N
Sb03g040720 Sorghum bicolor Sb03g040720 N
Sb09g021780 Sorghum bicolor Sb09g021780 N
Si002586m.g Setaria italica Si002586m.g N
Solyc11g068620.1 Solanum lycopersicum Solyc11g068620.1 N
TCM_041364 Theobroma cacao TCM_041364 N
Thhalv10010503m.g Eutrema salsugineum Thhalv10010503m.g N
Thhalv10014563m.g Eutrema salsugineum Thhalv10014563m.g N
Traes_5DL_43FC1B296 Triticum aestivum Traes_5DL_43FC1B296 N
TRIUR3_33275 Triticum urartu TRIUR3_33275 N
VIT_06s0080g00780 Vitis vinifera VIT_06s0080g00780 N
VIT_18s0041g00700 Vitis vinifera VIT_18s0041g00700 N