gw.270.22.1 (Branchiostoma floridae)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 gw.270.22.1 T173858_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.725 0.725
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.725 0.725
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.725 0.725
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.681 0.681
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.681 0.681
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.681 0.681
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.681 0.681
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.681 0.681
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.681 0.681
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.594 0.594
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.594 0.594
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.594 0.594
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.435 0.435
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.435 0.435
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.435 0.435
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.435 0.435
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw.270.22.1 E2F 1 31
gw.270.22.1 E2F 110 154

Links

Other E2F family TFs
Other Branchiostoma floridae TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29635.m000461 Ricinus communis 29635.m000461 I
29813.m001543 Ricinus communis 29813.m001543 I
30068.m002623 Ricinus communis 30068.m002623 I
30084.m000185 Ricinus communis 30084.m000185 I
30174.m008961 Ricinus communis 30174.m008961 I
30174.m009031 Ricinus communis 30174.m009031 I
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I
RAP2-11 Arabidopsis thaliana AT5G19790 D
BGIOSGA025360 Oryza indica BGIOSGA025360 I
BGIOSGA031114 Oryza indica BGIOSGA031114 I
BGIOSGA037681 Oryza indica BGIOSGA037681 I
Bo2g018360 Brassica oleracea Bo2g018360 I
Bo3g013830 Brassica oleracea Bo3g013830 I
Bo9g152440 Brassica oleracea Bo9g152440 I
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I
Bra002262 Brassica rapa Bra002262 I
Bra006518 Brassica rapa Bra006518 I
Bra020063 Brassica rapa Bra020063 I
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I
Carubv10002733m.g Capsella rubella Carubv10002733m.g I
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I
cassava28630.m1 Manihot esculenta cassava28630.m1 I
cassava40212.m1 Manihot esculenta cassava40212.m1 I
cassava4119.m1 Manihot esculenta cassava4119.m1 I
cassava4189.m1 Manihot esculenta cassava4189.m1 I
cassava47343.m1 Manihot esculenta cassava47343.m1 N
cassava4942.m1 Manihot esculenta cassava4942.m1 I
cassava9290.m1 Manihot esculenta cassava9290.m1 I
cassava9303.m1 Manihot esculenta cassava9303.m1 I
Ca_06590 Cicer arietinum Ca_06590 N
Ca_08232 Cicer arietinum Ca_08232 I
Ca_10494 Cicer arietinum Ca_10494 I
Ca_16397 Cicer arietinum Ca_16397 I
Ca_25424 Cicer arietinum Ca_25424 I
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I
Cla005054 Citrullus lanatus Cla005054 N
Cla010474 Citrullus lanatus Cla010474 I
Cla012318 Citrullus lanatus Cla012318 I
Cla021590 Citrullus lanatus Cla021590 I
Cucsa.158080 Cucumis sativus Cucsa.158080 I
Cucsa.193280 Cucumis sativus Cucsa.193280 N
Cucsa.258020 Cucumis sativus Cucsa.258020 I
Cucsa.334870 Cucumis sativus Cucsa.334870 I
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I
F775_02727 Aegilops tauschii F775_02727 I
F775_04303 Aegilops tauschii F775_04303 I
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I
GLYMA03G01931 Glycine max GLYMA03G01931 I
GLYMA07G08542 Glycine max GLYMA07G08542 I
GLYMA13G05690 Glycine max GLYMA13G05690 I
GLYMA13G29920 Glycine max GLYMA13G29920 N
GLYMA15G09190 Glycine max GLYMA15G09190 N
GLYMA16G04410 Glycine max GLYMA16G04410 I
GLYMA18G49761 Glycine max GLYMA18G49761 I
GLYMA19G03120 Glycine max GLYMA19G03120 I
GLYMA19G03165 Glycine max GLYMA19G03165 I
GLYMA19G29000 Glycine max GLYMA19G29000 I
GLYMA20G03890 Glycine max GLYMA20G03890 N
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I
GRMZM2G010100 Zea mays GRMZM2G010100 I
GRMZM2G018138 Zea mays GRMZM2G018138 I
GRMZM2G039112 Zea mays GRMZM2G039112 I
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N
LPERR07G05890 Leersia perrieri LPERR07G05890 I
LPERR07G17030 Leersia perrieri LPERR07G17030 I
LPERR09G12960 Leersia perrieri LPERR09G12960 I
LPERR12G14340 Leersia perrieri LPERR12G14340 I
Lus10001298.g Linum usitatissimum Lus10001298.g I
Lus10008291.g Linum usitatissimum Lus10008291.g N
Lus10010652.g Linum usitatissimum Lus10010652.g I
Lus10012703.g Linum usitatissimum Lus10012703.g I
Lus10013764.g Linum usitatissimum Lus10013764.g I
Lus10030430.g Linum usitatissimum Lus10030430.g I
Lus10036556.g Linum usitatissimum Lus10036556.g I
Lus10036793.g Linum usitatissimum Lus10036793.g I
Lus10037137.g Linum usitatissimum Lus10037137.g I
Lus10039171.g Linum usitatissimum Lus10039171.g I
Lus10041372.g Linum usitatissimum Lus10041372.g I
MDP0000127123 Malus domestica MDP0000127123 N
MDP0000133476 Malus domestica MDP0000133476 I
MDP0000138669 Malus domestica MDP0000138669 I
MDP0000157628 Malus domestica MDP0000157628 I
MDP0000177547 Malus domestica MDP0000177547 I
MDP0000197375 Malus domestica MDP0000197375 I
MDP0000276536 Malus domestica MDP0000276536 I
MDP0000316843 Malus domestica MDP0000316843 N
MDP0000525933 Malus domestica MDP0000525933 I
MDP0000551969 Malus domestica MDP0000551969 I
mgf018851m Mimulus guttatus mgf018851m I
mgf022665m Mimulus guttatus mgf022665m I
mgf024137m Mimulus guttatus mgf024137m N
MLOC_18783 Hordeum vulgare MLOC_18783 I
MLOC_7255 Hordeum vulgare MLOC_7255 I
MTR_2g016730 Medicago truncatula MTR_2g016730 N
MTR_4g082345 Medicago truncatula MTR_4g082345 I
MTR_4g111915 Medicago truncatula MTR_4g111915 N
MTR_4g112490 Medicago truncatula MTR_4g112490 N
MTR_6g012970 Medicago truncatula MTR_6g012970 I
MTR_7g011630 Medicago truncatula MTR_7g011630 I
MTR_7g085810 Medicago truncatula MTR_7g085810 I
MTR_8g032610 Medicago truncatula MTR_8g032610 I
OB07G15030 Oryza brachyantha OB07G15030 I
OB09G23520 Oryza brachyantha OB09G23520 I
OBART07G06690 Oryza barthii OBART07G06690 I
OBART12G17080 Oryza barthii OBART12G17080 I
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I
OLONG_022569 Oryza longistaminata OLONG_022569 I
OMERI09G12500 Oryza meridionalis OMERI09G12500 I
OMERI11G15200 Oryza meridionalis OMERI11G15200 I
ONIVA01G29960 Oryza nivara ONIVA01G29960 I
ONIVA09G17920 Oryza nivara ONIVA09G17920 I
ONIVA12G15550 Oryza nivara ONIVA12G15550 I
OPUNC07G06390 Oryza punctata OPUNC07G06390 I
OPUNC09G15300 Oryza punctata OPUNC09G15300 I
OPUNC12G15550 Oryza punctata OPUNC12G15550 I
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I
OS07G0204000 Oryza sativa OS07G0204000 I
OS12G0582900 Oryza sativa OS12G0582900 I
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I
Pavir.J28133 Panicum virgatum Pavir.J28133 I
Pavir.J28151 Panicum virgatum Pavir.J28151 I
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I
PK13330.1 Cannabis sativa PK13330.1 I
PK25269.1 Cannabis sativa PK25269.1 I
PK28640.1 Cannabis sativa PK28640.1 I
Pm000004 Prunus mume Pm000004 I
Pm008788 Prunus mume Pm008788 I
Pm015931 Prunus mume Pm015931 I
Pm025326 Prunus mume Pm025326 I
Pm030235 Prunus mume Pm030235 I
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N
POPTR_0002s15480 Populus trichocarpa POPTR_0002s15480 N
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I
Sb01g014810 Sorghum bicolor Sb01g014810 I
Sb02g006023 Sorghum bicolor Sb02g006023 I
Sb02g030350 Sorghum bicolor Sb02g030350 I
Sb08g019530 Sorghum bicolor Sb08g019530 I
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I
Si024417m.g Setaria italica Si024417m.g I
Si027288m.g Setaria italica Si027288m.g I
Si032213m.g Setaria italica Si032213m.g I
Si033237m.g Setaria italica Si033237m.g I
Si038848m.g Setaria italica Si038848m.g I
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N
TCM_005425 Theobroma cacao TCM_005425 I
TCM_011632 Theobroma cacao TCM_011632 I
TCM_014471 Theobroma cacao TCM_014471 I
TCM_015579 Theobroma cacao TCM_015579 I
TCM_018659 Theobroma cacao TCM_018659 I
TCM_025913 Theobroma cacao TCM_025913 I
TCM_040015 Theobroma cacao TCM_040015 I
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N
RAP2.11 Vitis vinifera VIT_08s0007g07250 I
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I