Bo9g022010 (Brassica oleracea)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bo9g022010 T191920_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.857 0.833
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.856 0.944
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.856 0.944
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.848 0.833
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.847 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.847 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.847 0.833
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.843 0.806
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.843 0.806
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.843 0.806
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.843 0.806
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.828 0.917
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.722
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.722
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g022010.1 GATA 242 277

Links

Other GATA family TFs
Other Brassica oleracea TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m011218 Ricinus communis 30190.m011218 N 0.000
Aquca_038_00045 Aquilegia coerulea Aquca_038_00045 N 0.000
AT1G63490 Arabidopsis thaliana AT1G63490 N 0.000
Bostr.9600s0015 Boechera stricta Bostr.9600s0015 N 0.000
BRADI1G29247 Brachypodium distachyon BRADI1G29247 N 0.000
Cagra.2104s0024 Capsella grandiflora Cagra.2104s0024 N 0.000
cassava14944.m1 Manihot esculenta cassava14944.m1 N 0.000
chr2.CM0304.950.nc Lotus japonicus chr2.CM0304.950.nc N 0.000
Cla011637 Citrullus lanatus Cla011637 N 0.000
Eucgr.D01851 Eucalyptus grandis Eucgr.D01851 N 0.000
gene32474-v1.0-hybrid Fragaria vesca gene32474-v1.0-hybrid N 0.000
GLYMA01G42890 Glycine max GLYMA01G42890 N 0.000
GLYMA11G02580 Glycine max GLYMA11G02580 N 0.000
Gorai.004G211700 Gossypium raimondii Gorai.004G211700 N 0.000
GRMZM2G466292 Zea mays GRMZM2G466292 N 0.000
Lus10008495.g Linum usitatissimum Lus10008495.g N 0.000
MDP0000158904 Malus domestica MDP0000158904 N 0.000
MDP0000162827 Malus domestica MDP0000162827 N 0.000
MDP0000286412 Malus domestica MDP0000286412 N 0.000
MDP0000287313 Malus domestica MDP0000287313 N 0.000
mgf018831m Mimulus guttatus mgf018831m N 0.000
MTR_5g010300 Medicago truncatula MTR_5g010300 N 0.000
orange1.1g000212m.g Citrus sinensis orange1.1g000212m.g N 0.000
PDK_20s1401711g002 Phoenix dactylifera PDK_20s1401711g002 N 0.000
PK05702.1 Cannabis sativa PK05702.1 N 0.000
Pm023825 Prunus mume Pm023825 N 0.000
Sb10g031260 Sorghum bicolor Sb10g031260 N 0.000
scaffold_200168.1 Arabidopsis lyrata scaffold_200168.1 N 0.000
Solyc08g081000.2 Solanum lycopersicum Solyc08g081000.2 N 0.000
TCM_016246 Theobroma cacao TCM_016246 N 0.000
Thhalv10023217m.g Eutrema salsugineum Thhalv10023217m.g N 0.000