Thhalv10015842m.g (Eutrema salsugineum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Thhalv10015842m.g T229573_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WUS
M06905_2.00 		Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA		 Dap-seq
OMalley et al.(2016)
WUS1_col_a 		0.669 0.649
WUS
M06906_2.00 		Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA		 Dap-seq
OMalley et al.(2016)
WUS1_colamp_a 		0.669 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10015842m Homeodomain 26 87

Links

Other Homeodomain family TFs
Other Eutrema salsugineum TFs

437 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29889.m003248 Ricinus communis 29889.m003248 I 0.000
30128.m008883 Ricinus communis 30128.m008883 N 0.000
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.000
Aquca_003_00608 Aquilegia coerulea Aquca_003_00608 N 0.000
GATA15 Arabidopsis thaliana AT3G06740 D 0.000
GATA17 Arabidopsis thaliana AT3G16870 I 0.000
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.000
GATA16 Arabidopsis thaliana AT5G49300 D 0.000
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.000
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.000
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.000
Bo00847s050 Brassica oleracea Bo00847s050 I 0.000
Bo1g055120 Brassica oleracea Bo1g055120 I 0.000
Bo1g122970 Brassica oleracea Bo1g122970 I 0.000
Bo1g147740 Brassica oleracea Bo1g147740 I 0.000
Bo3g068560 Brassica oleracea Bo3g068560 I 0.000
Bo5g123610 Brassica oleracea Bo5g123610 I 0.000
Bo7g092660 Brassica oleracea Bo7g092660 I 0.000
Bo7g104200 Brassica oleracea Bo7g104200 I 0.000
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.000
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.000
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.000
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.000
Bra012742 Brassica rapa Bra012742 I 0.000
Bra020650 Brassica rapa Bra020650 I 0.000
Bra021209 Brassica rapa Bra021209 I 0.000
Bra022184 Brassica rapa Bra022184 I 0.000
Bra033533 Brassica rapa Bra033533 I 0.000
Bra037421 Brassica rapa Bra037421 I 0.000
Bra040288 Brassica rapa Bra040288 I 0.000
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.000
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.000
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.000
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.000
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.000
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.000
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.000
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.000
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.000
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.000
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.000
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.000
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.000
Ca_02992 Cicer arietinum Ca_02992 I 0.000
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.000
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.000
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.000
Cla022104 Citrullus lanatus Cla022104 I 0.000
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.000
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.000
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.000
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.000
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.000
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.000
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.000
F775_43556 Aegilops tauschii F775_43556 I 0.000
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.000
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.000
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.000
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.000
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.000
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.000
Gorai.002G029400 Gossypium raimondii Gorai.002G029400 I 0.000
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.000
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.000
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.000
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.000
GRMZM2G114775 Zea mays GRMZM2G114775 I 0.000
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.000
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.000
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.000
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.000
Lus10020684.g Linum usitatissimum Lus10020684.g N 0.000
Lus10029863.g Linum usitatissimum Lus10029863.g N 0.000
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.000
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.000
MDP0000309902 Malus domestica MDP0000309902 I 0.000
mgf003937m Mimulus guttatus mgf003937m I 0.000
mgf022078m Mimulus guttatus mgf022078m I 0.000
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.000
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.000
OB01G55040 Oryza brachyantha OB01G55040 I 0.000
OBART01G45830 Oryza barthii OBART01G45830 I 0.000
OBART03G39750 Oryza barthii OBART03G39750 I 0.000
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.000
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.000
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.000
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.000
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.000
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.000
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.000
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.000
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.000
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.000
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.000
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.000
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.000
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.000
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.000
OS01G0976800 Oryza sativa OS01G0976800 I 0.000
OS03G0831200 Oryza sativa OS03G0831200 I 0.000
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.000
Pavir.J03766 Panicum virgatum Pavir.J03766 I 0.000
Pavir.J12379 Panicum virgatum Pavir.J12379 I 0.000
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.000
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.000
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.000
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.000
PK18820.1 Cannabis sativa PK18820.1 I 0.000
PK21934.1 Cannabis sativa PK21934.1 I 0.000
Pm003128 Prunus mume Pm003128 I 0.000
Pm008287 Prunus mume Pm008287 I 0.000
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.000
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.000
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.000
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.000
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.000
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.000
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.000
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.000
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.000
Sb01g002270 Sorghum bicolor Sb01g002270 I 0.000
Sb03g047520 Sorghum bicolor Sb03g047520 I 0.000
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.000
Si002983m.g Setaria italica Si002983m.g I 0.000
Si037892m.g Setaria italica Si037892m.g I 0.000
Solyc01g060490.2 Solanum lycopersicum Solyc01g060490.2 N 0.000
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.000
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.000
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.000
TCM_004753 Theobroma cacao TCM_004753 I 0.000
TCM_021303 Theobroma cacao TCM_021303 I 0.000
TCM_026732 Theobroma cacao TCM_026732 I 0.000
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.000
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.000
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.000
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.000
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.000
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.000
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.000
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.000
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.000
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.000