HDID_0000863701 (Hymenolepis diminuta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 HDID_0000863701 T234269_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NKX2-5
M00323_2.00 		Homo sapiens
NWYAAGTGSNN
NNSCACTTRWN		 PBM
Barrera et al.(2016)
NKX2-5_REF 		0.679 0.789
Nkx2-5
M00404_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-5_3436 		0.679 0.789
NKX2-5
M05346_2.00 		Homo sapiens
BHYAAGTGBN
NVCACTTRDV		 SELEX
Yin et al.(2017)
NKX2-5_FL_HT-SELEX 		0.679 0.789
Nkx2-5
M02686_2.00 		Mus musculus
WTAAKWK
MWMTTAW		 SELEX
Mathelier et al.(2014)
MA0063.1 		0.679 0.789
Nkx2-5
M08136_2.00 		Mus musculus
SYTGAGWGSYH
DRSCWCTCARS		 ChIP-seq
Mathelier et al.(2014)
MA0503.1 		0.679 0.789
NKX2-5
M09163_2.00 		Homo sapiens
BKRAGWGV
BCWCTYMV		 Misc
Kulakovskiy et al.(2013)
NKX25_HUMAN.H11MO.0.B 		0.679 0.789
Nkx2-5
M09177_2.00 		Mus musculus
NBYBRAGTGS
SCACTYVRVN		 Misc
Kulakovskiy et al.(2013)
NKX25_MOUSE.H11MO.0.A 		0.679 0.789
Nkx2-5
M09567_2.00 		Mus musculus
HBRAGWGBNN
NNVCWCTYVD		 Misc
Heinz et al.(2010)
HL1-Nkx2.5.biotin_GSE21529 		0.679 0.789
NKX2-5
M10742_2.00 		Homo sapiens
TYAAGTG
CACTTRA		 Transfac
Matys et al.(2006)
V$NKX25_01 		0.679 0.789
NKX2-5
M10743_2.00 		Homo sapiens
CWTAATTV
BAATTAWG		 Transfac
Matys et al.(2006)
V$NKX25_02 		0.679 0.789
NKX2-5
M10744_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q5 		0.679 0.789
NKX2-5
M10745_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q6 		0.679 0.789
NKX2-5
M00324_2.00 		Homo sapiens
NHNNNNN
NNNNNDN		 PBM
Barrera et al.(2016)
NKX2-5_T178M 		0.679 0.789
NKX2-5
M05347_2.00 		Homo sapiens
BTYAAGTGGN
NCCACTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_1 		0.679 0.789
NKX2-5
M05348_2.00 		Homo sapiens
BTYAACGAB
VTCGTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_2 		0.679 0.789
NKX2-5
M00322_2.00 		Homo sapiens
NNNRNNN
NNNYNNN		 PBM
Barrera et al.(2016)
NKX2-5_R190C 		0.679 0.772
Nkx2-3
M00497_2.00 		Mus musculus
NNRAGDRNN
NNYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-3_3435 		0.678 0.772
NKX2-3
M05042_2.00 		Homo sapiens
NNBAAGTGBN
NVCACTTVNN		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_HT-SELEX 		0.678 0.772
NKX2-3
M05045_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_HT-SELEX 		0.678 0.772
NKX2-3
M05043_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_1 		0.678 0.772
NKX2-3
M05044_2.00 		Homo sapiens
SDYAACGHB
VDCGTTRHS		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_2 		0.678 0.772
NKX2-3
M05046_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_1 		0.678 0.772
NKX2-3
M05047_2.00 		Homo sapiens
SWYAACSHB
VDSGTTRWS		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_2 		0.678 0.772
NKX2-5
M00321_2.00 		Homo sapiens
HNAAGTRBNN
NNVYACTTND		 PBM
Barrera et al.(2016)
NKX2-5_R161P 		0.674 0.772
ceh-28
M08210_2.00 		Caenorhabditis elegans
AATCGATW
WATCGATT		 ChIP-seq
Contrino et al.(2012)
Mw138 		0.651 0.649
NKX2-5
M00320_2.00 		Homo sapiens
NHBAAKWRN
NYWMTTVDN		 PBM
Barrera et al.(2016)
NKX2-5_K183E 		0.646 0.772
Nkx2-6
M00496_2.00 		Mus musculus
HYAAGTRBNN
NNVYACTTRD		 PBM
Berger et al.(2008)
Nkx2-6_3437 		0.645 0.684
scro
M03854_2.00 		Drosophila melanogaster
NNBRMGTGB
VCACKYVNN		 SELEX
Nitta et al.(2015)
scro_1 		0.632 0.684
tin
M00559_2.00 		Drosophila melanogaster
NWYAAGTGGNN
NNCCACTTRWN		 PBM
Busser et al.(2012a)
Tin 		0.632 0.632
tin
M03809_2.00 		Drosophila melanogaster
BTYAAGTGSN
NSCACTTRAV		 SELEX
Nitta et al.(2015)
tin_1 		0.632 0.632
tin
M06284_2.00 		Drosophila melanogaster
BTYAAGTG
CACTTRAV		 B1H
Zhu et al.(2011)
Tin_Cell_FBgn0004110 		0.632 0.632
tin
M06285_2.00 		Drosophila melanogaster
BCTCAAGTGSVN
NBSCACTTGAGV		 B1H
Zhu et al.(2011)
tin_FlyReg_FBgn0004110 		0.632 0.632
tin
M06286_2.00 		Drosophila melanogaster
BWYAAGTR
YACTTRWV		 B1H
Zhu et al.(2011)
Tin_SOLEXA_FBgn0004110 		0.632 0.632
tin
M08421_2.00 		Drosophila melanogaster
DBTCRAGTGS
SCACTYGAVH		 ChIP-chip
Mathelier et al.(2014)
MA0247.2 		0.632 0.632
Nkx2-1
M00385_2.00 		Mus musculus
NNRAGDRN
NYHCTYNN		 PBM
Berger et al.(2008)
Titf1_1722 		0.627 0.684
Nkx2-4
M00514_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-4_3074 		0.627 0.684
NKX2-1
M09146_2.00 		Homo sapiens
BTKGAGWGBN
NVCWCTCMAV		 Misc
Kulakovskiy et al.(2013)
NKX21_HUMAN.H11MO.0.A 		0.627 0.684
Nkx2-1
M09171_2.00 		Mus musculus
NBTKGAGWGB
VCWCTCMAVN		 Misc
Kulakovskiy et al.(2013)
NKX21_MOUSE.H11MO.0.A 		0.627 0.684
Nkx2-1
M09563_2.00 		Mus musculus
BTBRAGWGBH
DVCWCTYVAV		 Misc
Heinz et al.(2010)
LungAC-Nkx2.1_GSE43252 		0.627 0.684
NKX2-1
M10694_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TITF1_Q3 		0.627 0.684
NKX2-1
M10695_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5_01 		0.627 0.684
NKX2-1
M10696_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5 		0.627 0.684
NKX2-1
M10697_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q6 		0.627 0.684
ceh-24
M02181_2.00 		Caenorhabditis elegans
NNRAKWRNN
NNYWMTYNN		 PBM
Weirauch et al.(2014)
pTH6327 		0.627 0.667
Nkx2-9
M00520_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-9_3082 		0.604 0.702
Nkx2-9
M00800_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Weirauch et al.(2013)
pTH2842 		0.604 0.702
Nkx2-9
M09215_2.00 		Mus musculus
BTCAAGKRB
VYMCTTGAV		 Misc
Kulakovskiy et al.(2013)
NKX28_MOUSE.H11MO.0.C 		0.604 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HDID_0000863701-mRNA-1 Homeodomain 148 204

Links

Other Homeodomain family TFs
Other Hymenolepis diminuta TFs

585 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29794.m003323 Ricinus communis 29794.m003323 N
29912.m005322 Ricinus communis 29912.m005322 N
AMTR_s00064p00107710 Amborella trichopoda AMTR_s00064p00107710 N
Aquca_020_00467 Aquilegia coerulea Aquca_020_00467 N
GATA22 Arabidopsis thaliana AT4G26150 N
GATA21 Arabidopsis thaliana AT5G56860 N
BGIOSGA006859 Oryza indica BGIOSGA006859 N
BGIOSGA023117 Oryza indica BGIOSGA023117 N
BGIOSGA023119 Oryza indica BGIOSGA023119 N
Bo1g042950 Brassica oleracea Bo1g042950 N
Bo2g033970 Brassica oleracea Bo2g033970 N
Bo3g019610 Brassica oleracea Bo3g019610 I
Bo7g110740 Brassica oleracea Bo7g110740 N
Bo9g127360 Brassica oleracea Bo9g127360 N
Bostr.26833s0575 Boechera stricta Bostr.26833s0575 N
Bostr.7867s0434 Boechera stricta Bostr.7867s0434 N
Bra002788 Brassica rapa Bra002788 N
Bra006851 Brassica rapa Bra006851 I
Bra019118 Brassica rapa Bra019118 N
Bra026461 Brassica rapa Bra026461 N
Bra035633 Brassica rapa Bra035633 N
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I
BRADI1G37480 Brachypodium distachyon BRADI1G37480 N
BRADI3G08240 Brachypodium distachyon BRADI3G08240 N
Cagra.3467s0056 Capsella grandiflora Cagra.3467s0056 N
Cagra.4138s0005 Capsella grandiflora Cagra.4138s0005 N
Carubv10005113m.g Capsella rubella Carubv10005113m.g N
Carubv10026556m.g Capsella rubella Carubv10026556m.g N
cassava32152.m1 Manihot esculenta cassava32152.m1 N
cassava33236.m1 Manihot esculenta cassava33236.m1 N
cassava43851.valid.m1 Manihot esculenta cassava43851.valid.m1 N
chr4.CM0244.740.nd Lotus japonicus chr4.CM0244.740.nd N
chr5.CM0019.380.nc Lotus japonicus chr5.CM0019.380.nc N
Ciclev10008943m.g Citrus clementina Ciclev10008943m.g N
Ciclev10008968m.g Citrus clementina Ciclev10008968m.g N
Ciclev10009004m.g Citrus clementina Ciclev10009004m.g N
Cla021191 Citrullus lanatus Cla021191 N
Cucsa.353330 Cucumis sativus Cucsa.353330 N
Cucsa.397360 Cucumis sativus Cucsa.397360 N
Eucgr.C03048 Eucalyptus grandis Eucgr.C03048 N
Eucgr.C03895 Eucalyptus grandis Eucgr.C03895 N
evm.TU.supercontig_93.28 Carica papaya evm.TU.supercontig_93.28 N
CGA1 Arabidopsis lyrata fgenesh2_kg.7__1630__AT4G26150.1 N
GNC Arabidopsis lyrata fgenesh2_kg.8__1592__AT5G56860.1 N
gene02686-v1.0-hybrid Fragaria vesca gene02686-v1.0-hybrid N
gene12624-v1.0-hybrid Fragaria vesca gene12624-v1.0-hybrid N
GLYMA04G05431 Glycine max GLYMA04G05431 N
GLYMA13G00200 Glycine max GLYMA13G00200 N
GLYMA14G10830 Glycine max GLYMA14G10830 N
GLYMA15G18380 Glycine max GLYMA15G18380 N
GLYMA17G06290 Glycine max GLYMA17G06290 N
GLYMA17G34670 Glycine max GLYMA17G34670 N
Gorai.009G031400 Gossypium raimondii Gorai.009G031400 N
Gorai.009G045000 Gossypium raimondii Gorai.009G045000 N
Gorai.010G082800 Gossypium raimondii Gorai.010G082800 N
Gorai.010G101100 Gossypium raimondii Gorai.010G101100 N
GRMZM2G031983 Zea mays GRMZM2G031983 N
GRMZM2G039586 Zea mays GRMZM2G039586 N
GSMUA_Achr10G27510_001 Musa acuminata GSMUA_Achr10G27510_001 N
GSMUA_Achr2G16730_001 Musa acuminata GSMUA_Achr2G16730_001 I
GSMUA_Achr4G30820_001 Musa acuminata GSMUA_Achr4G30820_001 N
GSMUA_Achr7G09030_001 Musa acuminata GSMUA_Achr7G09030_001 I
GSMUA_Achr8G24880_001 Musa acuminata GSMUA_Achr8G24880_001 N
GSMUA_Achr8G33850_001 Musa acuminata GSMUA_Achr8G33850_001 N
LPERR02G07780 Leersia perrieri LPERR02G07780 N
LPERR06G15680 Leersia perrieri LPERR06G15680 N
Lus10029863.g Linum usitatissimum Lus10029863.g N
MDP0000131803 Malus domestica MDP0000131803 N
MDP0000190038 Malus domestica MDP0000190038 N
MDP0000237740 Malus domestica MDP0000237740 N
MDP0000309902 Malus domestica MDP0000309902 I
MDP0000739900 Malus domestica MDP0000739900 N
mgf008387m Mimulus guttatus mgf008387m N
mgf025842m Mimulus guttatus mgf025842m N
MLOC_10364 Hordeum vulgare MLOC_10364 N
MLOC_70809 Hordeum vulgare MLOC_70809 N
MTR_1g016170 Medicago truncatula MTR_1g016170 N
MTR_2g038720 Medicago truncatula MTR_2g038720 N
MTR_4g126350 Medicago truncatula MTR_4g126350 N
OB02G18010 Oryza brachyantha OB02G18010 N
OB06G26630 Oryza brachyantha OB06G26630 N
OBART02G08990 Oryza barthii OBART02G08990 N
OBART06G19060 Oryza barthii OBART06G19060 N
OGLUM02G09200 Oryza glumaepatula OGLUM02G09200 N
OGLUM06G20240 Oryza glumaepatula OGLUM06G20240 N
OMERI02G10250 Oryza meridionalis OMERI02G10250 N
ONIVA06G22870 Oryza nivara ONIVA06G22870 N
OPUNC02G08040 Oryza punctata OPUNC02G08040 N
OPUNC06G17260 Oryza punctata OPUNC06G17260 N
orange1.1g020987m.g Citrus sinensis orange1.1g020987m.g N
orange1.1g021329m.g Citrus sinensis orange1.1g021329m.g N
orange1.1g021859m.g Citrus sinensis orange1.1g021859m.g N
ORGLA06G0158200 Oryza glaberrima ORGLA06G0158200 N
ORUFI02G09020 Oryza rufipogon ORUFI02G09020 N
ORUFI06G20160 Oryza rufipogon ORUFI06G20160 N
OS02G0220400 Oryza sativa OS02G0220400 N
OS06G0571800 Oryza sativa OS06G0571800 N
Pavir.Aa02907 Panicum virgatum Pavir.Aa02907 N
Pavir.Ab00790 Panicum virgatum Pavir.Ab00790 N
Pavir.Da00760 Panicum virgatum Pavir.Da00760 N
Pavir.Db01250 Panicum virgatum Pavir.Db01250 N
PGSC0003DMG400000280 Solanum tuberosum PGSC0003DMG400000280 N
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I
PGSC0003DMG400004493 Solanum tuberosum PGSC0003DMG400004493 N
PK07593.1 Cannabis sativa PK07593.1 N
PK21934.1 Cannabis sativa PK21934.1 I
Pm005502 Prunus mume Pm005502 N
Pm027164 Prunus mume Pm027164 N
POPTR_0006s24560 Populus trichocarpa POPTR_0006s24560 N
POPTR_0018s05160 Populus trichocarpa POPTR_0018s05160 N
PRUPE_ppa018120mg Prunus persica PRUPE_ppa018120mg N
PRUPE_ppa024374mg Prunus persica PRUPE_ppa024374mg N
SapurV1A.0086s0290 Salix purpurea SapurV1A.0086s0290 N
Sb04g007750 Sorghum bicolor Sb04g007750 N
Sb10g022580 Sorghum bicolor Sb10g022580 N
Si006733m.g Setaria italica Si006733m.g N
Si019058m.g Setaria italica Si019058m.g N
Solyc07g038160.2 Solanum lycopersicum Solyc07g038160.2 N
Solyc12g008830.1 Solanum lycopersicum Solyc12g008830.1 N
TCM_037285 Theobroma cacao TCM_037285 N
TCM_037666 Theobroma cacao TCM_037666 N
Thhalv10013793m.g Eutrema salsugineum Thhalv10013793m.g N
Thhalv10025461m.g Eutrema salsugineum Thhalv10025461m.g N
Traes_6AS_1BF082306 Triticum aestivum Traes_6AS_1BF082306 N
Traes_6AS_1BF0823061 Triticum aestivum Traes_6AS_1BF0823061 N
Traes_6BS_4EA352A7A Triticum aestivum Traes_6BS_4EA352A7A N
Traes_6DS_77038429A Triticum aestivum Traes_6DS_77038429A N
Traes_7BL_86BB5C61E Triticum aestivum Traes_7BL_86BB5C61E N
Traes_7DL_BFADB408C Triticum aestivum Traes_7DL_BFADB408C N
VIT_04s0008g01290 Vitis vinifera VIT_04s0008g01290 N
VIT_11s0016g02210 Vitis vinifera VIT_11s0016g02210 N