Bo8g092560 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo8g092560 T245015_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.737 0.737
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.737 0.737
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g092560.1 LOB 13 112

Links

Other LOB family TFs
Other Brassica oleracea TFs

289 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28320.m001139 Ricinus communis 28320.m001139 I
29841.m002846 Ricinus communis 29841.m002846 I
29848.m004632 Ricinus communis 29848.m004632 I
SHN3 Arabidopsis lyrata Al_scaffold_0006_1028 I
AMTR_s00025p00249140 Amborella trichopoda AMTR_s00025p00249140 I
Aquca_006_00004 Aquilegia coerulea Aquca_006_00004 I
WIN1 Arabidopsis thaliana AT1G15360 D
SHN2 Arabidopsis thaliana AT5G11190 D
SHN3 Arabidopsis thaliana AT5G25390 I
BGIOSGA007748 Oryza indica BGIOSGA007748 I
BGIOSGA020923 Oryza indica BGIOSGA020923 I
Bo7g096000 Brassica oleracea Bo7g096000 N
Bo8g066410 Brassica oleracea Bo8g066410 I
Bo8g106100 Brassica oleracea Bo8g106100 I
Bo9g011380 Brassica oleracea Bo9g011380 I
Bo9g171490 Brassica oleracea Bo9g171490 I
Bostr.23997s0014 Boechera stricta Bostr.23997s0014 I
Bostr.29827s0278 Boechera stricta Bostr.29827s0278 I
Bostr.7128s0149 Boechera stricta Bostr.7128s0149 I
Bra008985 Brassica rapa Bra008985 I
Bra016663 Brassica rapa Bra016663 I
Bra026140 Brassica rapa Bra026140 I
Bra036543 Brassica rapa Bra036543 I
BRADI1G36590 Brachypodium distachyon BRADI1G36590 I
BRADI3G07450 Brachypodium distachyon BRADI3G07450 I
Cagra.1110s0005 Capsella grandiflora Cagra.1110s0005 I
Cagra.2238s0086 Capsella grandiflora Cagra.2238s0086 I
Carubv10002040m.g Capsella rubella Carubv10002040m.g I
Carubv10003042m.g Capsella rubella Carubv10003042m.g I
Carubv10003050m.g Capsella rubella Carubv10003050m.g I
Carubv10010317m.g Capsella rubella Carubv10010317m.g I
cassava10120.m1 Manihot esculenta cassava10120.m1 I
cassava11389.m1 Manihot esculenta cassava11389.m1 I
cassava24223.valid.m1 Manihot esculenta cassava24223.valid.m1 I
cassava30505.valid.m1 Manihot esculenta cassava30505.valid.m1 I
cassava34153.m1 Manihot esculenta cassava34153.m1 I
Ca_01764 Cicer arietinum Ca_01764 I
Ca_02880 Cicer arietinum Ca_02880 I
Ca_06673 Cicer arietinum Ca_06673 I
Ca_09050 Cicer arietinum Ca_09050 I
Ca_13435 Cicer arietinum Ca_13435 I
chr4.LjT07P17.60.nc Lotus japonicus chr4.LjT07P17.60.nc I
Ciclev10009447m.g Citrus clementina Ciclev10009447m.g I
Ciclev10009526m.g Citrus clementina Ciclev10009526m.g I
Ciclev10027305m.g Citrus clementina Ciclev10027305m.g I
Cla012435 Citrullus lanatus Cla012435 I
Cla012914 Citrullus lanatus Cla012914 I
Cla016967 Citrullus lanatus Cla016967 I
Cla021283 Citrullus lanatus Cla021283 I
Cucsa.132120 Cucumis sativus Cucsa.132120 I
Cucsa.292670 Cucumis sativus Cucsa.292670 I
Cucsa.310360 Cucumis sativus Cucsa.310360 I
Eucgr.C01178 Eucalyptus grandis Eucgr.C01178 I
Eucgr.C04221 Eucalyptus grandis Eucgr.C04221 I
evm.TU.supercontig_10.254 Carica papaya evm.TU.supercontig_10.254 I
evm.TU.supercontig_259.2 Carica papaya evm.TU.supercontig_259.2 I
F775_28212 Aegilops tauschii F775_28212 I
SHN2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002026 I
SHN1 Arabidopsis lyrata fgenesh2_kg.1__1687__AT1G15360.1 I
gene11636-v1.0-hybrid Fragaria vesca gene11636-v1.0-hybrid I
gene31040-v1.0-hybrid Fragaria vesca gene31040-v1.0-hybrid I
GLYMA04G07140 Glycine max GLYMA04G07140 I
GLYMA04G19650 Glycine max GLYMA04G19650 I
GLYMA06G07240 Glycine max GLYMA06G07240 I
GLYMA06G29110 Glycine max GLYMA06G29110 I
GLYMA07G03500 Glycine max GLYMA07G03500 I
GLYMA08G22590 Glycine max GLYMA08G22590 I
GLYMA13G23570 Glycine max GLYMA13G23570 I
GLYMA15G01140 Glycine max GLYMA15G01140 I
GLYMA17G12330 Glycine max GLYMA17G12330 I
GLYMA17G31900 Glycine max GLYMA17G31900 I
Gorai.001G033200 Gossypium raimondii Gorai.001G033200 I
Gorai.001G042300 Gossypium raimondii Gorai.001G042300 I
Gorai.004G292600 Gossypium raimondii Gorai.004G292600 I
Gorai.009G017500 Gossypium raimondii Gorai.009G017500 I
Gorai.010G114800 Gossypium raimondii Gorai.010G114800 I
Gorai.011G082900 Gossypium raimondii Gorai.011G082900 I
GRMZM2G085678 Zea mays GRMZM2G085678 I
GRMZM2G106591 Zea mays GRMZM2G106591 I
GSMUA_Achr10G24170_001 Musa acuminata GSMUA_Achr10G24170_001 I
GSMUA_Achr10G27000_001 Musa acuminata GSMUA_Achr10G27000_001 I
GSMUA_Achr6G05210_001 Musa acuminata GSMUA_Achr6G05210_001 I
GSMUA_Achr7G10160_001 Musa acuminata GSMUA_Achr7G10160_001 I
GSMUA_Achr9G28540_001 Musa acuminata GSMUA_Achr9G28540_001 I
LjSGA_019003.1 Lotus japonicus LjSGA_019003.1 I
LjSGA_040388.1 Lotus japonicus LjSGA_040388.1 I
LjT09F21.30.nc Lotus japonicus LjT09F21.30.nc I
LPERR02G06710 Leersia perrieri LPERR02G06710 I
LPERR06G17010 Leersia perrieri LPERR06G17010 I
Lus10002015.g Linum usitatissimum Lus10002015.g I
Lus10002912.g Linum usitatissimum Lus10002912.g I
Lus10005343.g Linum usitatissimum Lus10005343.g I
Lus10005716.g Linum usitatissimum Lus10005716.g I
Lus10009480.g Linum usitatissimum Lus10009480.g I
Lus10019414.g Linum usitatissimum Lus10019414.g I
Lus10030097.g Linum usitatissimum Lus10030097.g I
Lus10041023.g Linum usitatissimum Lus10041023.g I
MDP0000124316 Malus domestica MDP0000124316 I
MDP0000172065 Malus domestica MDP0000172065 I
MDP0000178263 Malus domestica MDP0000178263 I
MDP0000287350 Malus domestica MDP0000287350 I
MDP0000290880 Malus domestica MDP0000290880 I
MDP0000430870 Malus domestica MDP0000430870 I
MDP0000873258 Malus domestica MDP0000873258 I
mgf005189m Mimulus guttatus mgf005189m I
mgf017744m Mimulus guttatus mgf017744m I
MLOC_12747 Hordeum vulgare MLOC_12747 I
MLOC_59305 Hordeum vulgare MLOC_59305 I
MTR_1g012470 Medicago truncatula MTR_1g012470 I
MTR_2g103700 Medicago truncatula MTR_2g103700 I
MTR_3g107380 Medicago truncatula MTR_3g107380 I
MTR_4g010640 Medicago truncatula MTR_4g010640 I
MTR_4g114570 Medicago truncatula MTR_4g114570 I
OB02G17060 Oryza brachyantha OB02G17060 I
OB06G28040 Oryza brachyantha OB06G28040 I
OBART02G07740 Oryza barthii OBART02G07740 I
OBART06G20370 Oryza barthii OBART06G20370 I
OGLUM02G07820 Oryza glumaepatula OGLUM02G07820 I
OGLUM06G21440 Oryza glumaepatula OGLUM06G21440 I
OLONG_004398 Oryza longistaminata OLONG_004398 I
OLONG_016936 Oryza longistaminata OLONG_016936 I
OMERI06G20980 Oryza meridionalis OMERI06G20980 I
ONIVA02G09300 Oryza nivara ONIVA02G09300 I
ONIVA06G24150 Oryza nivara ONIVA06G24150 I
OPUNC02G06960 Oryza punctata OPUNC02G06960 I
OPUNC06G18570 Oryza punctata OPUNC06G18570 I
orange1.1g027896m.g Citrus sinensis orange1.1g027896m.g I
orange1.1g028913m.g Citrus sinensis orange1.1g028913m.g I
ORGLA02G0073000 Oryza glaberrima ORGLA02G0073000 I
ORGLA06G0167900 Oryza glaberrima ORGLA06G0167900 I
ORUFI03G26280 Oryza rufipogon ORUFI03G26280 I
ORUFI06G21790 Oryza rufipogon ORUFI06G21790 I
OS02G0202000 Oryza sativa OS02G0202000 I
OS06G0604000 Oryza sativa OS06G0604000 I
Pavir.Aa02977 Panicum virgatum Pavir.Aa02977 I
Pavir.Ab00737 Panicum virgatum Pavir.Ab00737 I
Pavir.Da00422 Panicum virgatum Pavir.Da00422 I
Pavir.Db01224 Panicum virgatum Pavir.Db01224 I
PGSC0003DMG400000636 Solanum tuberosum PGSC0003DMG400000636 I
PGSC0003DMG400002889 Solanum tuberosum PGSC0003DMG400002889 I
Pm004616 Prunus mume Pm004616 I
Pm027542 Prunus mume Pm027542 I
SHN1 Populus trichocarpa POPTR_0003s02750 I
POPTR_0006s06870 Populus trichocarpa POPTR_0006s06870 I
POPTR_0006s26990 Populus trichocarpa POPTR_0006s26990 I
POPTR_0018s01680 Populus trichocarpa POPTR_0018s01680 I
POPTR_0018s13130 Populus trichocarpa POPTR_0018s13130 I
PRUPE_ppa010601mg Prunus persica PRUPE_ppa010601mg I
PRUPE_ppa023908mg Prunus persica PRUPE_ppa023908mg I
PRUPE_ppa024826mg Prunus persica PRUPE_ppa024826mg I
SapurV1A.0034s0630 Salix purpurea SapurV1A.0034s0630 I
SapurV1A.0043s0690 Salix purpurea SapurV1A.0043s0690 I
SapurV1A.0192s0020 Salix purpurea SapurV1A.0192s0020 I
SapurV1A.0198s0340 Salix purpurea SapurV1A.0198s0340 N
SapurV1A.0198s0350 Salix purpurea SapurV1A.0198s0350 N
SapurV1A.0199s0350 Salix purpurea SapurV1A.0199s0350 I
SapurV1A.1759s0040 Salix purpurea SapurV1A.1759s0040 I
Sb04g006970 Sorghum bicolor Sb04g006970 I
Sb10g023600 Sorghum bicolor Sb10g023600 I
Si008394m.g Setaria italica Si008394m.g I
Solyc03g116610.2 Solanum lycopersicum Solyc03g116610.2 I
Solyc12g009490.1 Solanum lycopersicum Solyc12g009490.1 I
TCM_027157 Theobroma cacao TCM_027157 I
TCM_037007 Theobroma cacao TCM_037007 I
TCM_038081 Theobroma cacao TCM_038081 I
Thhalv10005514m.g Eutrema salsugineum Thhalv10005514m.g I
Thhalv10008845m.g Eutrema salsugineum Thhalv10008845m.g I
Traes_6AS_8E7166D79 Triticum aestivum Traes_6AS_8E7166D79 I
Traes_6DS_E6A0BE6CD Triticum aestivum Traes_6DS_E6A0BE6CD I
Traes_7DL_E1D7A51C8 Triticum aestivum Traes_7DL_E1D7A51C8 I
TRIUR3_22374 Triticum urartu TRIUR3_22374 I
VIT_04s0008g05440 Vitis vinifera VIT_04s0008g05440 I
SHN1 Vitis vinifera VIT_09s0002g06750 I
VIT_11s0016g05340 Vitis vinifera VIT_11s0016g05340 I