Solyc09g008850.2 (Solanum lycopersicum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Solyc09g008850.2 T249892_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.950 0.819
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.950 0.819
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.950 0.819
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.946 0.764
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc09g008850.2.1 MADF 154 233

Links

Other MADF family TFs
Other Solanum lycopersicum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28077.m000081 Ricinus communis 28077.m000081 I 0.891
29815.m000504 Ricinus communis 29815.m000504 I 0.956
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.877
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.890
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.930
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.950
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.841
Bo5g137800 Brassica oleracea Bo5g137800 I 0.940
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.950
Bra029812 Brassica rapa Bra029812 I 0.940
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.841
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.943
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.943
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.952
Ca_20148 Cicer arietinum Ca_20148 I 0.963
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.956
Cla018015 Citrullus lanatus Cla018015 I 0.960
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.960
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.959
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.896
F775_31501 Aegilops tauschii F775_31501 I 0.841
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.949
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.935
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.966
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.923
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.966
GLYMA20G33031 Glycine max GLYMA20G33031 I 0.834
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.951
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.842
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.905
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.895
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.838
MDP0000201016 Malus domestica MDP0000201016 I 0.921
MDP0000399495 Malus domestica MDP0000399495 I 0.921
MDP0000415733 Malus domestica MDP0000415733 I 0.921
mgf008067m Mimulus guttatus mgf008067m I 0.935
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.853
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.965
OB04G18670 Oryza brachyantha OB04G18670 I 0.841
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.841
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.841
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.841
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.841
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.841
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.830
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.968
PK04914.1 Cannabis sativa PK04914.1 D 0.946
Pm026265 Prunus mume Pm026265 I 0.945
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.918
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.890
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.886
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.945
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.927
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.918
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.885
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.885
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.839
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.855
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.855
Si009787m.g Setaria italica Si009787m.g I 0.838
TCM_022397 Theobroma cacao TCM_022397 I 0.942
TCM_043551 Theobroma cacao TCM_043551 I 0.898
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.943
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.841
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.841
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.841
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.959
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.933