Bra015643 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra015643 T253283_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL67
M10907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G77950_01 		0.833 0.833
AGL3
M02693_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 SELEX
Mathelier et al.(2014)
MA0001.2 		0.708 0.708
AGL3
M10908_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 Transfac
Matys et al.(2006)
P$AGL3_01 		0.708 0.708
AGL3
M10909_2.00 		Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN		 Transfac
Matys et al.(2006)
P$AGL3_02 		0.708 0.708
AGL3
M10910_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL3_03 		0.708 0.708
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.708 0.708
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.708 0.708
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.708 0.708
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.708 0.708
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra015643.1-P MADS box 10 57

Links

Other MADS box family TFs
Other Brassica rapa TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB1A Oryza indica BGIOSGA029415 I 0.000
BRADI4G35610 Brachypodium distachyon BRADI4G35610 I 0.000
BRADI4G35650 Brachypodium distachyon BRADI4G35650 I 0.000
F775_27111 Aegilops tauschii F775_27111 I 0.000
GRMZM2G069082 Zea mays GRMZM2G069082 I 0.000
GRMZM2G069126 Zea mays GRMZM2G069126 I 0.000
GRMZM2G069146 Zea mays GRMZM2G069146 I 0.000
GRMZM2G124011 Zea mays GRMZM2G124011 I 0.000
GRMZM2G124037 Zea mays GRMZM2G124037 I 0.000
LPERR09G12950 Leersia perrieri LPERR09G12950 I 0.000
OBART09G16830 Oryza barthii OBART09G16830 I 0.000
OGLUM09G17430 Oryza glumaepatula OGLUM09G17430 I 0.000
OMERI09G12490 Oryza meridionalis OMERI09G12490 I 0.000
ONIVA09G17900 Oryza nivara ONIVA09G17900 I 0.000
OPUNC09G15260 Oryza punctata OPUNC09G15260 I 0.000
OPUNC09G15290 Oryza punctata OPUNC09G15290 I 0.000
ORGLA08G0220100 Oryza glaberrima ORGLA08G0220100 I 0.000
ORUFI09G18210 Oryza rufipogon ORUFI09G18210 I 0.000
DREB1A Oryza sativa OS09G0522200 D 0.000
Pavir.Ba01280 Panicum virgatum Pavir.Ba01280 I 0.000
Pavir.Ba01281 Panicum virgatum Pavir.Ba01281 I 0.000
Pavir.Fb02246 Panicum virgatum Pavir.Fb02246 I 0.000
Pavir.J03891 Panicum virgatum Pavir.J03891 I 0.000
Pavir.J03892 Panicum virgatum Pavir.J03892 I 0.000
Pavir.J03893 Panicum virgatum Pavir.J03893 I 0.000
Pavir.J27101 Panicum virgatum Pavir.J27101 I 0.000
Q8GZQ2_MAIZE Zea mays Q8GZQ2_MAIZE D 0.000
Sb02g030320 Sorghum bicolor Sb02g030320 I 0.000
Sb02g030330 Sorghum bicolor Sb02g030330 I 0.000
Sb02g030340 Sorghum bicolor Sb02g030340 I 0.000
Sb05g006275 Sorghum bicolor Sb05g006275 I 0.000
Si030998m.g Setaria italica Si030998m.g I 0.000
Si031001m.g Setaria italica Si031001m.g I 0.000
Traes_5BL_D16B19610 Triticum aestivum Traes_5BL_D16B19610 I 0.000