Bo2g082270 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo2g082270 T267161_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATY13
M07035_2.00 		Arabidopsis thaliana
HAMCHMCCAMCHAHH
DDTDGKTGGKDGKTD		 Dap-seq
OMalley et al.(2016)
ATY13_col_a 		0.868 0.957
ATY13
M07036_2.00 		Arabidopsis thaliana
HAMCHHCCAACHAHH
DDTDGTTGGDDGKTD		 Dap-seq
OMalley et al.(2016)
ATY13_colamp_a 		0.868 0.957
MYB96
M07153_2.00 		Arabidopsis thaliana
HHHHHYHHCCAACYAHYWNHN
NDNWRDTRGTTGGDDRDDDDD		 Dap-seq
OMalley et al.(2016)
MYB96_colamp_a 		0.827 0.903
MYB96
M07154_2.00 		Arabidopsis thaliana
YAMCHNCCAMCHAHHHHH
DDDDDTDGKTGGNDGKTR		 Dap-seq
OMalley et al.(2016)
MYB96_col_b 		0.827 0.903
MYB30
M07089_2.00 		Arabidopsis thaliana
NHHHCAACYACYWHH
DDWRGTRGTTGDDDN		 Dap-seq
OMalley et al.(2016)
MYB30_col_a 		0.817 0.892
MYB30
M07090_2.00 		Arabidopsis thaliana
HHHYYHCCAACYAMY
RKTRGTTGGDRRDDD		 Dap-seq
OMalley et al.(2016)
MYB30_colamp_a 		0.817 0.892
MYB60
M07001_2.00 		Arabidopsis thaliana
HNNHYYCAACYACYWHHNN
NNDDWRGTRGTTGRRDNND		 Dap-seq
OMalley et al.(2016)
MYB60_col 		0.804 0.892
MYB94
M02298_2.00 		Arabidopsis thaliana
DACCGGTH
DACCGGTH		 PBM
Weirauch et al.(2014)
pTH7085 		0.797 0.882
MYB94
M07094_2.00 		Arabidopsis thaliana
HHNYHYCAACYACYWHHNN
NNDDWRGTRGTTGRDRNDD		 Dap-seq
OMalley et al.(2016)
MYB94_col_b 		0.797 0.882
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g082270.1 Myb 54 101
Bo2g082270.1 Myb 107 152

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

308 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
0600010013 Ostreococcus tauri 0600010013 I 0.000
ACAC_0000798501 Angiostrongylus cantonensis ACAC_0000798501 N 0.000
ACAC_0000817201 Angiostrongylus cantonensis ACAC_0000817201 N 0.000
ACOC_0000235301 Angiostrongylus costaricensis ACOC_0000235301 N 0.000
ACOC_0001190001 Angiostrongylus costaricensis ACOC_0001190001 N 0.000
ALUE_0000365901 Ascaris lumbricoides ALUE_0000365901 N 0.000
ALUE_0001190701 Ascaris lumbricoides ALUE_0001190701 N 0.000
ANCCEY_04224 Ancylostoma ceylanicum ANCCEY_04224 N 0.000
ANCDUO_12352 Ancylostoma duodenale ANCDUO_12352 N 0.000
ANCDUO_24269 Ancylostoma duodenale ANCDUO_24269 N 0.000
ASIM_0001147101 Anisakis simplex ASIM_0001147101 N 0.000
ASIM_0001178701 Anisakis simplex ASIM_0001178701 N 0.000
ASIS014204 Anopheles sinensis ASIS014204 N 0.000
ASU_05994 Ascaris suum ASU_05994 N 0.000
ASU_09087 Ascaris suum ASU_09087 N 0.000
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.000
BTMF_0000420901 Brugia timori BTMF_0000420901 N 0.000
BXY_1081800 Bursaphelenchus xylophilus BXY_1081800 I 0.000
CBG20663 Caenorhabditis briggsae CBG20663 N 0.000
CBN04053 Caenorhabditis brenneri CBN04053 N 0.000
CJA04355 Caenorhabditis japonica CJA04355 N 0.000
CRE11852 Caenorhabditis remanei CRE11852 N 0.000
DICVIV_05502 Dictyocaulus viviparus DICVIV_05502 N 0.000
DME_0000779601 Dracunculus medinensis DME_0000779601 N 0.000
ENSCING00000000505 Ciona intestinalis ENSCING00000000505 I 0.000
EVEC_0000079801 Enterobius vermicularis EVEC_0000079801 N 0.000
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.000
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.000
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.000
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.000
GPUH_0002275001 Gongylonema pulchrum GPUH_0002275001 N 0.000
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.000
HCOI01550200 Haemonchus contortus HCOI01550200 N 0.000
HPLM_0001324601 Haemonchus placei HPLM_0001324601 N 0.000
Hsal_03836--NA Harpegnathos saltator Hsal_03836--NA N 0.000
L596_g16476 Steinernema carpocapsae L596_g16476 N 0.000
L596_g28088 Steinernema carpocapsae L596_g28088 N 0.000
L889_g16198 Steinernema feltiae L889_g16198 N 0.000
L889_g9094 Steinernema feltiae L889_g9094 N 0.000
L892_g19058 Steinernema scapterisci L892_g19058 N 0.000
L892_g23618 Steinernema scapterisci L892_g23618 N 0.000
L893_g23503 Steinernema glaseri L893_g23503 N 0.000
L893_g29974 Steinernema glaseri L893_g29974 N 0.000
L898_g4830 Steinernema monticolum L898_g4830 N 0.000
L898_g7743 Steinernema monticolum L898_g7743 N 0.000
LOAG_08062 Loa loa LOAG_08062 N 0.000
NBR_0001277401 Nippostrongylus brasiliensis NBR_0001277401 N 0.000
NECAME_17555 Necator americanus NECAME_17555 N 0.000
NECAME_17981 Necator americanus NECAME_17981 N 0.000
OESDEN_09619 Oesophagostomum dentatum OESDEN_09619 N 0.000
OESDEN_18796 Oesophagostomum dentatum OESDEN_18796 N 0.000
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.000
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.000
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.000
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.000
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.000
PPA12247 Pristionchus pacificus PPA12247 N 0.000
Ppa-hmg-1.1 Pristionchus pacificus PPA22767 N 0.000
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.000
PTRK_0001490800 Parastrongyloides trichosuri PTRK_0001490800 N 0.000
RSKR_0000587700 Rhabditophanes kr3021 RSKR_0000587700 N 0.000
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.000
scaffold113-EXSNAP2012.49 Pristionchus exspectatus scaffold113-EXSNAP2012.49 N 0.000
scaffold1425-EXSNAP2012.3 Pristionchus exspectatus scaffold1425-EXSNAP2012.3 N 0.000
scaffold593-EXSNAP2012.5 Pristionchus exspectatus scaffold593-EXSNAP2012.5 N 0.000
Si007288m.g Setaria italica Si007288m.g I 0.000
SMUV_0000499601 Syphacia muris SMUV_0000499601 N 0.000
SPAL_0000986100 Strongyloides papillosus SPAL_0000986100 N 0.000
SSTP_0001024100 Strongyloides stercoralis SSTP_0001024100 N 0.000
SVE_0294800 Strongyloides venezuelensis SVE_0294800 N 0.000
SVUK_0001721701 Strongylus vulgaris SVUK_0001721701 N 0.000
TCLT_0000071201 Thelazia callipaeda TCLT_0000071201 N 0.000
TCNE_0000332201 Toxocara canis TCNE_0000332201 N 0.000
TCNE_0001025901 Toxocara canis TCNE_0001025901 N 0.000
TELCIR_02603 Teladorsagia circumcincta TELCIR_02603 N 0.000
hmg-1.1 Caenorhabditis elegans WBGene00001971 N 0.000
WUBG_06999 Wuchereria bancrofti WUBG_06999 N 0.000