Cucsa.318610 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.318610 T284521_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.779 0.828
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.779 0.828
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.778 0.828
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.778 0.828
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.763 0.839
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.763 0.839
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.742 0.796
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.719 0.753
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.693 0.710
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.693 0.710
ATY53
M07078_2.00 		Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN
NNNNNNNNDDHGKTWGGTRVR		 Dap-seq
OMalley et al.(2016)
MYB67_col_a 		0.678 0.688
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.672 0.785
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.666 0.699
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.666 0.699
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.666 0.699
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.665 0.763
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.665 0.763
PK06182.1
M02349_2.00 		Cannabis sativa
WTACCTACCN
NGGTAGGTAW		 PBM
Weirauch et al.(2014)
pTH9581 		0.661 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.318610.1 Myb 15 62
Cucsa.318610.1 Myb 68 113

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

863 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29693.m002035 Ricinus communis 29693.m002035 N
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N
AT2G34450 Arabidopsis thaliana AT2G34450 N
HMGB5 Arabidopsis thaliana AT4G35570 I
BGIOSGA004165 Oryza indica BGIOSGA004165 N
BGIOSGA004167 Oryza indica BGIOSGA004167 N
Bo4g182600 Brassica oleracea Bo4g182600 N
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N
Bra021911 Brassica rapa Bra021911 N
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N
Carubv10024236m.g Capsella rubella Carubv10024236m.g N
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N
Ca_05162 Cicer arietinum Ca_05162 N
Ca_05164 Cicer arietinum Ca_05164 N
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N
Cucsa.047620 Cucumis sativus Cucsa.047620 N
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N
F775_05073 Aegilops tauschii F775_05073 I
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N
GLYMA05G25900 Glycine max GLYMA05G25900 N
GLYMA08G08840 Glycine max GLYMA08G08840 N
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N
GRMZM2G024247 Zea mays GRMZM2G024247 N
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N
GUITHDRAFT_114564 Guillardia theta GUITHDRAFT_114564 N
GUITHDRAFT_76406 Guillardia theta GUITHDRAFT_76406 N
LPERR01G21970 Leersia perrieri LPERR01G21970 N
Lus10015268.g Linum usitatissimum Lus10015268.g N
Lus10025391.g Linum usitatissimum Lus10025391.g N
MDP0000143506 Malus domestica MDP0000143506 N
MDP0000170945 Malus domestica MDP0000170945 N
MDP0000392251 Malus domestica MDP0000392251 N
MDP0000695104 Malus domestica MDP0000695104 N
mgf009922m Mimulus guttatus mgf009922m N
MLOC_7069 Hordeum vulgare MLOC_7069 N
MTR_4g094622 Medicago truncatula MTR_4g094622 N
OB01G34910 Oryza brachyantha OB01G34910 I
OBART01G25720 Oryza barthii OBART01G25720 N
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N
OS01G0666200 Oryza sativa OS01G0666200 N
OSTLU_19125 Ostreococcus lucimarinus OSTLU_19125 N
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I
Pavir.J05892 Panicum virgatum Pavir.J05892 N
PK22924.1 Cannabis sativa PK22924.1 N
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N
Sb03g030540 Sorghum bicolor Sb03g030540 N
Si003021m.g Setaria italica Si003021m.g N
TCM_029514 Theobroma cacao TCM_029514 N
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I