Carubv10001591m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10001591m.g T286222_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.909 1.000
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.909 1.000
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.909 0.978
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.909 0.978
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.909 0.978
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.891 0.935
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.891 0.935
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.891 0.935
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.795 0.870
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.795 0.870
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.795 0.870
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.696
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001591m Myb 52 97

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_009_00954 Aquilegia coerulea Aquca_009_00954 N
BGIOSGA010017 Oryza indica BGIOSGA010017 N
BRADI4G43680 Brachypodium distachyon BRADI4G43680 N
Ciclev10011141m.g Citrus clementina Ciclev10011141m.g N
F775_08186 Aegilops tauschii F775_08186 N
gene18433-v1.0-hybrid Fragaria vesca gene18433-v1.0-hybrid N
GRMZM2G049159 Zea mays GRMZM2G049159 N
GRMZM2G098784 Zea mays GRMZM2G098784 N
LPERR03G24920 Leersia perrieri LPERR03G24920 N
MLOC_73193 Hordeum vulgare MLOC_73193 N
OB03G37330 Oryza brachyantha OB03G37330 N
OBART03G30260 Oryza barthii OBART03G30260 N
OGLUM03G30480 Oryza glumaepatula OGLUM03G30480 N
OLONG_013585 Oryza longistaminata OLONG_013585 N
OMERI03G26460 Oryza meridionalis OMERI03G26460 N
ONIVA03G31510 Oryza nivara ONIVA03G31510 N
OPUNC03G27510 Oryza punctata OPUNC03G27510 N
orange1.1g004514m.g Citrus sinensis orange1.1g004514m.g N
ORGLA03G0287000 Oryza glaberrima ORGLA03G0287000 N
ORUFI03G31480 Oryza rufipogon ORUFI03G31480 N
OS03G0690600 Oryza sativa OS03G0690600 N
Pavir.Ia03770 Panicum virgatum Pavir.Ia03770 N
Pavir.J32327 Panicum virgatum Pavir.J32327 N
PGSC0003DMG400019200 Solanum tuberosum PGSC0003DMG400019200 N
Pm002685 Prunus mume Pm002685 N
POPTR_0006s08690 Populus trichocarpa POPTR_0006s08690 N
PRUPE_ppa001883mg Prunus persica PRUPE_ppa001883mg N
SapurV1A.0001s1700 Salix purpurea SapurV1A.0001s1700 N
Sb01g039670 Sorghum bicolor Sb01g039670 N
Si034417m.g Setaria italica Si034417m.g N
Solyc10g086530.1 Solanum lycopersicum Solyc10g086530.1 N
TCM_021920 Theobroma cacao TCM_021920 N
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N
Traes_5BL_C8BEC527F Triticum aestivum Traes_5BL_C8BEC527F N
Traes_5DL_8FD0CF6B9 Triticum aestivum Traes_5DL_8FD0CF6B9 N
VIT_08s0007g00510 Vitis vinifera VIT_08s0007g00510 N