HMGB13 (Arabidopsis thaliana)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AT4G11080 T326482_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00		 Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a		 (Direct) (Direct)
HMGB13
M07269_2.00		 Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G11080.1 Sox 129 196
AT4G11080.1 Sox 246 312
AT4G11080.1 Sox 372 440

Links

Other Sox family TFs
Other Arabidopsis thaliana TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29917.m001977 Ricinus communis 29917.m001977 I 0.000
30147.m013937 Ricinus communis 30147.m013937 I 0.000
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.000
MYB118 Arabidopsis thaliana AT3G27785 D 0.000
MYB98 Arabidopsis thaliana AT4G18770 D 0.000
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.000
BGIOSGA036541 Oryza indica BGIOSGA036541 I 0.000
Bo1g019910 Brassica oleracea Bo1g019910 I 0.000
Bo3g157300 Brassica oleracea Bo3g157300 I 0.000
Bo7g106240 Brassica oleracea Bo7g106240 I 0.000
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.000
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.000
Bra012579 Brassica rapa Bra012579 I 0.000
Bra013346 Brassica rapa Bra013346 I 0.000
Bra020992 Brassica rapa Bra020992 I 0.000
Bra025299 Brassica rapa Bra025299 I 0.000
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.000
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.000
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.000
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.000
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.000
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.000
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.000
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.000
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.000
Ca_07482 Cicer arietinum Ca_07482 I 0.000
Ca_17087 Cicer arietinum Ca_17087 I 0.000
Ca_17294 Cicer arietinum Ca_17294 I 0.000
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.000
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.000
Cla019490 Citrullus lanatus Cla019490 I 0.000
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.000
Eucgr.B00300 Eucalyptus grandis Eucgr.B00300 I 0.000
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.000
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.000
F775_22212 Aegilops tauschii F775_22212 I 0.000
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.000
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.000
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.000
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.000
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.000
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.000
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.000
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.000
GRMZM2G302549 Zea mays GRMZM2G302549 I 0.000
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.000
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.000
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I 0.000
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.000
LPERR12G04190 Leersia perrieri LPERR12G04190 I 0.000
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.000
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.000
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.000
MDP0000215359 Malus domestica MDP0000215359 I 0.000
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.000
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.000
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.000
OB06G13860 Oryza brachyantha OB06G13860 I 0.000
OB12G14410 Oryza brachyantha OB12G14410 I 0.000
OBART06G04170 Oryza barthii OBART06G04170 I 0.000
OBART12G04480 Oryza barthii OBART12G04480 I 0.000
OBART12G04500 Oryza barthii OBART12G04500 I 0.000
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.000
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I 0.000
OLONG_008158 Oryza longistaminata OLONG_008158 I 0.000
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.000
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.000
OMERI12G02760 Oryza meridionalis OMERI12G02760 I 0.000
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.000
ONIVA12G04220 Oryza nivara ONIVA12G04220 I 0.000
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.000
OPUNC12G04510 Oryza punctata OPUNC12G04510 I 0.000
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.000
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.000
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.000
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I 0.000
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.000
ORUFI12G05180 Oryza rufipogon ORUFI12G05180 I 0.000
OS06G0162700 Oryza sativa OS06G0162700 I 0.000
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.000
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.000
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.000
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.000
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.000
Pm024743 Prunus mume Pm024743 I 0.000
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.000
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.000
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.000
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.000
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.000
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.000
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.000
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.000
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.000
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.000
Si039046m.g Setaria italica Si039046m.g I 0.000
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.000
TCM_012087 Theobroma cacao TCM_012087 I 0.000
TCM_016909 Theobroma cacao TCM_016909 I 0.000
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.000
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.000
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.000
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.000
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.000
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.000
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I 0.000
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.000
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.000