Thhalv10028648m.g (Eutrema salsugineum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Thhalv10028648m.g T334741_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.662 0.878
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.662 0.878
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10028648m Sox 138 206
Thhalv10028648m Sox 255 321
Thhalv10028648m Sox 381 449

Links

Other Sox family TFs
Other Eutrema salsugineum TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30076.m004693 Ricinus communis 30076.m004693 I 0.000
GIS2 Arabidopsis thaliana AT5G06650 I 0.000
BGIOSGA029710 Oryza indica BGIOSGA029710 I 0.000
Bo2g007320 Brassica oleracea Bo2g007320 I 0.000
Bo2g155500 Brassica oleracea Bo2g155500 N 0.000
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I 0.000
Bostr.29827s0107 Boechera stricta Bostr.29827s0107 N 0.000
Bra020571 Brassica rapa Bra020571 N 0.000
Bra028724 Brassica rapa Bra028724 I 0.000
Carubv10003820m.g Capsella rubella Carubv10003820m.g I 0.000
Carubv10018785m.g Capsella rubella Carubv10018785m.g I 0.000
Ca_08116 Cicer arietinum Ca_08116 I 0.000
Ca_23376 Cicer arietinum Ca_23376 N 0.000
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I 0.000
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I 0.000
e_gw1.34.233.1 Physcomitrella patens e_gw1.34.233.1 I 0.000
F775_05447 Aegilops tauschii F775_05447 N 0.000
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I 0.000
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I 0.000
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I 0.000
GLYMA03G37610 Glycine max GLYMA03G37610 I 0.000
GLYMA19G40220 Glycine max GLYMA19G40220 I 0.000
GRMZM2G703281 Zea mays GRMZM2G703281 I 0.000
LPERR09G07930 Leersia perrieri LPERR09G07930 I 0.000
Lus10017229.g Linum usitatissimum Lus10017229.g I 0.000
MDP0000121370 Malus domestica MDP0000121370 I 0.000
MDP0000165710 Malus domestica MDP0000165710 I 0.000
MLOC_38864 Hordeum vulgare MLOC_38864 N 0.000
MLOC_4507 Hordeum vulgare MLOC_4507 I 0.000
MTR_2g067740 Medicago truncatula MTR_2g067740 N 0.000
OB09G17800 Oryza brachyantha OB09G17800 I 0.000
OBART09G11250 Oryza barthii OBART09G11250 I 0.000
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I 0.000
OLONG_006424 Oryza longistaminata OLONG_006424 I 0.000
OMERI09G08780 Oryza meridionalis OMERI09G08780 I 0.000
ONIVA09G10990 Oryza nivara ONIVA09G10990 I 0.000
OPUNC09G09720 Oryza punctata OPUNC09G09720 I 0.000
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I 0.000
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I 0.000
OS09G0431900 Oryza sativa OS09G0431900 I 0.000
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I 0.000
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I 0.000
Pm008291 Prunus mume Pm008291 I 0.000
SapurV1A.0052s0050 Salix purpurea SapurV1A.0052s0050 I 0.000
Si028367m.g Setaria italica Si028367m.g I 0.000
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I 0.000
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I 0.000
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I 0.000
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I 0.000
TRIUR3_22340 Triticum urartu TRIUR3_22340 I 0.000
TRIUR3_30765 Triticum urartu TRIUR3_30765 N 0.000