scaffold1445-EXSNAP2012.1 (Pristionchus exspectatus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 scaffold1445-EXSNAP2012.1 T336897_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pop-1
M00712_2.00 		Caenorhabditis elegans
NNHDWVNNNN
NNNNBWHDNN		 PBM
Narasimhan et al.(2015)
pTH9135 		0.508 0.609
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold1445-EXSNAP2012.1 Sox 135 205

Links

Other Sox family TFs
Other Pristionchus exspectatus TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0003_2798 Arabidopsis lyrata Al_scaffold_0003_2798 I
SNZ Arabidopsis thaliana AT2G39250 I
SMZ Arabidopsis thaliana AT3G54990 D
TOE2 Arabidopsis thaliana AT5G60120 D
Bo6g068410 Brassica oleracea Bo6g068410 I
Bo8g087280 Brassica oleracea Bo8g087280 I
Bo9g141100 Brassica oleracea Bo9g141100 I
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I
Bra002510 Brassica rapa Bra002510 I
Bra007123 Brassica rapa Bra007123 I
Bra020262 Brassica rapa Bra020262 I
Cagra.0716s0040 Capsella grandiflora Cagra.0716s0040 I
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I
Carubv10018526m.g Capsella rubella Carubv10018526m.g I
Carubv10023614m.g Capsella rubella Carubv10023614m.g I
Carubv10026292m.g Capsella rubella Carubv10026292m.g I
Ca_26761 Cicer arietinum Ca_26761 I
Cla020387 Citrullus lanatus Cla020387 I
Cucsa.165940 Cucumis sativus Cucsa.165940 I
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I
SNZ Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001673 I
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I
GLYMA02G09600 Glycine max GLYMA02G09600 I
GLYMA10G22390 Glycine max GLYMA10G22390 I
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I
GRMZM2G416701 Zea mays GRMZM2G416701 I
Lus10040365.g Linum usitatissimum Lus10040365.g I
MDP0000130802 Malus domestica MDP0000130802 I
MDP0000281079 Malus domestica MDP0000281079 I
MDP0000285955 Malus domestica MDP0000285955 I
MTR_1g049140 Medicago truncatula MTR_1g049140 I
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I
PK16652.1 Cannabis sativa PK16652.1 I
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I
Sb10g001490 Sorghum bicolor Sb10g001490 I
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I