Bra012990 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra012990 T343778_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.971 0.544
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.971 0.538
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.943 0.380
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.921 0.405
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.921 0.405
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.907 0.342
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.907 0.342
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.891 0.316
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.883 0.310
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.867 0.285
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.865 0.285
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.865 0.285
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.858 0.278
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.857 0.291
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.857 0.291
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.857 0.291
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012990.1-P TCP 66 365

Links

Other TCP family TFs
Other Brassica rapa TFs

425 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30055.m001542 Ricinus communis 30055.m001542 N
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N
WIP6 Arabidopsis thaliana AT1G13290 N
BGIOSGA000452 Oryza indica BGIOSGA000452 N
BGIOSGA031001 Oryza indica BGIOSGA031001 N
Bo5g015200 Brassica oleracea Bo5g015200 N
Bo5g081360 Brassica oleracea Bo5g081360 N
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N
Bra019822 Brassica rapa Bra019822 N
BRADI2G23870 Brachypodium distachyon BRADI2G23870 N
BRADI2G55540 Brachypodium distachyon BRADI2G55540 N
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N
Carubv10012013m.g Capsella rubella Carubv10012013m.g N
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N
cassava16214.m1 Manihot esculenta cassava16214.m1 N
Ca_07051 Cicer arietinum Ca_07051 N
Ca_16482 Cicer arietinum Ca_16482 N
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N
Cla000184 Citrullus lanatus Cla000184 N
Cucsa.199850 Cucumis sativus Cucsa.199850 N
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N
F775_11193 Aegilops tauschii F775_11193 N
F775_14972 Aegilops tauschii F775_14972 N
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N
GLYMA11G19060 Glycine max GLYMA11G19060 N
GLYMA12G09400 Glycine max GLYMA12G09400 N
GLYMA12G30930 Glycine max GLYMA12G30930 N
GLYMA13G39370 Glycine max GLYMA13G39370 N
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N
GRMZM2G000836 Zea mays GRMZM2G000836 N
GRMZM2G071101 Zea mays GRMZM2G071101 N
GRMZM2G084014 Zea mays GRMZM2G084014 N
GRMZM2G445684 Zea mays GRMZM2G445684 N
GSMUA_Achr11G18950_001 Musa acuminata GSMUA_Achr11G18950_001 N
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N
GSMUA_Achr5G26210_001 Musa acuminata GSMUA_Achr5G26210_001 N
LPERR01G32600 Leersia perrieri LPERR01G32600 N
LPERR08G16620 Leersia perrieri LPERR08G16620 N
LPERR09G10700 Leersia perrieri LPERR09G10700 N
Lus10004887.g Linum usitatissimum Lus10004887.g N
Lus10020597.g Linum usitatissimum Lus10020597.g N
Lus10029525.g Linum usitatissimum Lus10029525.g N
Lus10039613.g Linum usitatissimum Lus10039613.g N
MDP0000131949 Malus domestica MDP0000131949 N
MDP0000300013 Malus domestica MDP0000300013 N
MLOC_2787 Hordeum vulgare MLOC_2787 N
OB05G26090 Oryza brachyantha OB05G26090 N
OB08G26650 Oryza brachyantha OB08G26650 N
OBART01G37960 Oryza barthii OBART01G37960 N
OBART02G07320 Oryza barthii OBART02G07320 N
OBART08G19670 Oryza barthii OBART08G19670 N
OGLUM01G42130 Oryza glumaepatula OGLUM01G42130 N
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N
OMERI01G34920 Oryza meridionalis OMERI01G34920 N
OMERI08G16450 Oryza meridionalis OMERI08G16450 N
OMERI09G11270 Oryza meridionalis OMERI09G11270 N
ONIVA08G21960 Oryza nivara ONIVA08G21960 N
ONIVA09G15100 Oryza nivara ONIVA09G15100 N
OPUNC01G36780 Oryza punctata OPUNC01G36780 N
OPUNC08G17810 Oryza punctata OPUNC08G17810 N
OPUNC09G12930 Oryza punctata OPUNC09G12930 N
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N
ORGLA01G0317700 Oryza glaberrima ORGLA01G0317700 N
ORGLA02G0068500 Oryza glaberrima ORGLA02G0068500 N
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N
ORUFI01G41290 Oryza rufipogon ORUFI01G41290 N
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N
OS01G0859100 Oryza sativa OS01G0859100 N
OS08G0504000 Oryza sativa OS08G0504000 N
OS09G0485600 Oryza sativa OS09G0485600 N
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N
Pavir.J11927 Panicum virgatum Pavir.J11927 N
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N
PK05257.1 Cannabis sativa PK05257.1 N
Pm001374 Prunus mume Pm001374 N
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N
Sb02g028220 Sorghum bicolor Sb02g028220 N
Sb07g028010 Sorghum bicolor Sb07g028010 N
Sb09g021850 Sorghum bicolor Sb09g021850 N
Si013819m.g Setaria italica Si013819m.g N
Si022296m.g Setaria italica Si022296m.g N
Si029897m.g Setaria italica Si029897m.g N
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N
TCM_041441 Theobroma cacao TCM_041441 N
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N
TRAES3BF099700020CFD_g Triticum aestivum TRAES3BF099700020CFD_g N
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N
TRIUR3_30490 Triticum urartu TRIUR3_30490 N
WIP3 Vitis vinifera VIT_06s0080g00270 N