lin-54 (Caenorhabditis elegans)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 WBGene00003037 T345887_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.800
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.800
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.787
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.773
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.773
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.773
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.760
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.747
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.640
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.613
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.613
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.613
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.613
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.613
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.600
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.587
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.573
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.573
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.560
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.560
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.560
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.560
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.560
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.547
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.547
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.547
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.520
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.507
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
JC8.6a TCR/CxC 174 210
JC8.6a TCR/CxC 250 287
JC8.6b TCR/CxC 168 204
JC8.6b TCR/CxC 244 281

Links

Other TCR/CxC family TFs
Other Caenorhabditis elegans TFs

1214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra009171 Brassica rapa Bra009171 N
F775_21292 Aegilops tauschii F775_21292 I
F775_21293 Aegilops tauschii F775_21293 I
GRMZM2G018336 Zea mays GRMZM2G018336 I
GRMZM2G065538 Zea mays GRMZM2G065538 I
mgf023686m Mimulus guttatus mgf023686m I
MLOC_48938 Hordeum vulgare MLOC_48938 N
OB01G36520 Oryza brachyantha OB01G36520 I
OB04G29740 Oryza brachyantha OB04G29740 I
OB05G32250 Oryza brachyantha OB05G32250 I
OBART01G02620 Oryza barthii OBART01G02620 I
OGLUM01G02860 Oryza glumaepatula OGLUM01G02860 I
OGLUM02G34080 Oryza glumaepatula OGLUM02G34080 N
OLONG_000415 Oryza longistaminata OLONG_000415 I
OLONG_010584 Oryza longistaminata OLONG_010584 I
OMERI11G18880 Oryza meridionalis OMERI11G18880 N
ONIVA02G36080 Oryza nivara ONIVA02G36080 N
OPUNC04G20430 Oryza punctata OPUNC04G20430 I
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I
OS02G0764100 Oryza sativa OS02G0764100 N
Pavir.Ea00485 Panicum virgatum Pavir.Ea00485 I
Pavir.J27608 Panicum virgatum Pavir.J27608 N
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I
Traes_3AS_2E5380A2A Triticum aestivum Traes_3AS_2E5380A2A I
Traes_3AS_82DEC629B Triticum aestivum Traes_3AS_82DEC629B N
Traes_3DS_CC9498D91 Triticum aestivum Traes_3DS_CC9498D91 N
Traes_4BL_F6827247E Triticum aestivum Traes_4BL_F6827247E N
Traes_4DL_59B1C9052 Triticum aestivum Traes_4DL_59B1C9052 I
Traes_4DL_872A1302F Triticum aestivum Traes_4DL_872A1302F I
TRIUR3_24850 Triticum urartu TRIUR3_24850 I
TRIUR3_24950 Triticum urartu TRIUR3_24950 I