MDP0000212287 (Malus domestica)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 MDP0000212287 T346095_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.239
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.213
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.213
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.211
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.211
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.200
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.200
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.200
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.200
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.200
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.200
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.200
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.200
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.200
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.200
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.200
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.197
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.197
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.197
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.197
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.197
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.197
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.197
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.189
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.189
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.187
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.187
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.173
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000212287 TCR/CxC 610 647

Links

Other TCR/CxC family TFs
Other Malus domestica TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28152.m000914 Ricinus communis 28152.m000914 N
30170.m013749 Ricinus communis 30170.m013749 N
Al_scaffold_0797_1 Arabidopsis lyrata Al_scaffold_0797_1 N
AMTR_s00164p00062120 Amborella trichopoda AMTR_s00164p00062120 N
Aquca_017_00066 Aquilegia coerulea Aquca_017_00066 N
Aquca_042_00162 Aquilegia coerulea Aquca_042_00162 N
Aquca_042_00163 Aquilegia coerulea Aquca_042_00163 N
BHLH54 Arabidopsis thaliana AT1G27740 N
AT2G14760 Arabidopsis thaliana AT2G14760 N
BHLH85 Arabidopsis thaliana AT4G33880 N
BHLH139 Arabidopsis thaliana AT5G43175 N
BGIOSGA010239 Oryza indica BGIOSGA010239 N
BGIOSGA011251 Oryza indica BGIOSGA011251 N
BGIOSGA023988 Oryza indica BGIOSGA023988 N
BGIOSGA035917 Oryza indica BGIOSGA035917 N
Bo1g007780 Brassica oleracea Bo1g007780 N
Bo3g142890 Brassica oleracea Bo3g142890 N
Bo3g169400 Brassica oleracea Bo3g169400 N
Bo5g052310 Brassica oleracea Bo5g052310 N
Bo7g048630 Brassica oleracea Bo7g048630 N
Bo7g116460 Brassica oleracea Bo7g116460 N
Bostr.15697s0100 Boechera stricta Bostr.15697s0100 N
Bostr.2199s0029 Boechera stricta Bostr.2199s0029 N
Bostr.3148s0158 Boechera stricta Bostr.3148s0158 N
Bostr.7867s1234 Boechera stricta Bostr.7867s1234 N
Bra010921 Brassica rapa Bra010921 N
Bra011476 Brassica rapa Bra011476 N
Bra030063 Brassica rapa Bra030063 N
Bra032846 Brassica rapa Bra032846 N
Bra034587 Brassica rapa Bra034587 N
Bra036969 Brassica rapa Bra036969 N
BRADI1G14600 Brachypodium distachyon BRADI1G14600 N
BRADI1G22960 Brachypodium distachyon BRADI1G22960 N
BRADI1G70860 Brachypodium distachyon BRADI1G70860 N
BRADI4G03070 Brachypodium distachyon BRADI4G03070 N
Cagra.1103s0007 Capsella grandiflora Cagra.1103s0007 N
Cagra.1305s0010 Capsella grandiflora Cagra.1305s0010 N
Cagra.1822s0081 Capsella grandiflora Cagra.1822s0081 N
Cagra.9228s0001 Capsella grandiflora Cagra.9228s0001 N
Carubv10006623m.g Capsella rubella Carubv10006623m.g N
Carubv10011072m.g Capsella rubella Carubv10011072m.g N
Carubv10015484m.g Capsella rubella Carubv10015484m.g N
Carubv10028625m.g Capsella rubella Carubv10028625m.g N
cassava14986.m1 Manihot esculenta cassava14986.m1 N
cassava20440.m1 Manihot esculenta cassava20440.m1 N
cassava25589.m1 Manihot esculenta cassava25589.m1 N
cassava38950.m1 Manihot esculenta cassava38950.m1 N
Ca_01588 Cicer arietinum Ca_01588 N
Ca_05644 Cicer arietinum Ca_05644 N
Ca_11909 Cicer arietinum Ca_11909 N
Ca_18366 Cicer arietinum Ca_18366 N
chr1.CM0088.610.nd Lotus japonicus chr1.CM0088.610.nd N
chr5.CM0096.500.nd Lotus japonicus chr5.CM0096.500.nd N
chr5.CM0200.480.nc Lotus japonicus chr5.CM0200.480.nc N
Ciclev10003450m.g Citrus clementina Ciclev10003450m.g N
Ciclev10030309m.g Citrus clementina Ciclev10030309m.g N
Cla016346 Citrullus lanatus Cla016346 N
Cla020918 Citrullus lanatus Cla020918 N
Cla022968 Citrullus lanatus Cla022968 N
Cucsa.097490 Cucumis sativus Cucsa.097490 N
Cucsa.219180 Cucumis sativus Cucsa.219180 N
Cucsa.352750 Cucumis sativus Cucsa.352750 N
Eucgr.F02259 Eucalyptus grandis Eucgr.F02259 N
Eucgr.G01234 Eucalyptus grandis Eucgr.G01234 N
Eucgr.I01069 Eucalyptus grandis Eucgr.I01069 N
evm.TU.supercontig_106.57 Carica papaya evm.TU.supercontig_106.57 N
evm.TU.supercontig_142.14 Carica papaya evm.TU.supercontig_142.14 N
F775_02582 Aegilops tauschii F775_02582 N
F775_02706 Aegilops tauschii F775_02706 N
F775_27628 Aegilops tauschii F775_27628 N
RSL4 Arabidopsis lyrata fgenesh2_kg.1__2933__AT1G27740.1 N
fgenesh2_kg.3__3067__AT2G14760.1 Arabidopsis lyrata fgenesh2_kg.3__3067__AT2G14760.1 N
RSL2 Arabidopsis lyrata fgenesh2_kg.7__724__AT4G33880.1 N
fgenesh2_kg.8__503__AT5G43175.1 Arabidopsis lyrata fgenesh2_kg.8__503__AT5G43175.1 N
gene02560-v1.0-hybrid Fragaria vesca gene02560-v1.0-hybrid N
gene25555-v1.0-hybrid Fragaria vesca gene25555-v1.0-hybrid N
GLYMA04G04801 Glycine max GLYMA04G04801 N
GLYMA10G40350 Glycine max GLYMA10G40350 N
GLYMA10G40360 Glycine max GLYMA10G40360 N
GLYMA14G09781 Glycine max GLYMA14G09781 N
GLYMA17G35423 Glycine max GLYMA17G35423 N
GLYMA20G26980 Glycine max GLYMA20G26980 N
GLYMA20G26991 Glycine max GLYMA20G26991 N
Gorai.005G231900 Gossypium raimondii Gorai.005G231900 N
Gorai.009G219100 Gossypium raimondii Gorai.009G219100 N
Gorai.010G025400 Gossypium raimondii Gorai.010G025400 N
GRMZM2G057260 Zea mays GRMZM2G057260 N
GRMZM2G383841 Zea mays GRMZM2G383841 N
GRMZM2G395549 Zea mays GRMZM2G395549 N
GSMUA_Achr2G17130_001 Musa acuminata GSMUA_Achr2G17130_001 N
GSMUA_Achr3G18870_001 Musa acuminata GSMUA_Achr3G18870_001 N
GSMUA_Achr4G23240_001 Musa acuminata GSMUA_Achr4G23240_001 N
GSMUA_Achr6G07760_001 Musa acuminata GSMUA_Achr6G07760_001 N
GSMUA_Achr6G16890_001 Musa acuminata GSMUA_Achr6G16890_001 N
GSMUA_Achr9G09600_001 Musa acuminata GSMUA_Achr9G09600_001 N
GSMUA_AchrUn_randomG07080_001 Musa acuminata GSMUA_AchrUn_randomG07080_001 N
LPERR03G21650 Leersia perrieri LPERR03G21650 N
LPERR07G17840 Leersia perrieri LPERR07G17840 N
LPERR11G16970 Leersia perrieri LPERR11G16970 N
LPERR12G11190 Leersia perrieri LPERR12G11190 N
LPERR12G14550 Leersia perrieri LPERR12G14550 N
Lus10001068.g Linum usitatissimum Lus10001068.g N
Lus10004315.g Linum usitatissimum Lus10004315.g N
MDP0000131874 Malus domestica MDP0000131874 N
MDP0000145825 Malus domestica MDP0000145825 N
MDP0000198037 Malus domestica MDP0000198037 N
MDP0000573178 Malus domestica MDP0000573178 N
MDP0000946515 Malus domestica MDP0000946515 N
mgf018282m Mimulus guttatus mgf018282m N
mgf019332m Mimulus guttatus mgf019332m N
mgf022238m Mimulus guttatus mgf022238m N
mgf024863m Mimulus guttatus mgf024863m N
MLOC_60270 Hordeum vulgare MLOC_60270 N
MLOC_67369 Hordeum vulgare MLOC_67369 N
MLOC_74022 Hordeum vulgare MLOC_74022 N
MLOC_76486 Hordeum vulgare MLOC_76486 N
MTR_1g018090 Medicago truncatula MTR_1g018090 N
MTR_1g106460 Medicago truncatula MTR_1g106460 N
MTR_1g106480 Medicago truncatula MTR_1g106480 N
MTR_3g103030 Medicago truncatula MTR_3g103030 N
MTR_5g005110 Medicago truncatula MTR_5g005110 N
OB03G17860 Oryza brachyantha OB03G17860 N
OB03G34210 Oryza brachyantha OB03G34210 N
OB07G26210 Oryza brachyantha OB07G26210 N
OB12G24200 Oryza brachyantha OB12G24200 N
OBART03G07520 Oryza barthii OBART03G07520 N
OBART03G26170 Oryza barthii OBART03G26170 N
OBART12G17400 Oryza barthii OBART12G17400 N
OGLUM03G07680 Oryza glumaepatula OGLUM03G07680 N
OGLUM03G27050 Oryza glumaepatula OGLUM03G27050 N
OGLUM07G20330 Oryza glumaepatula OGLUM07G20330 N
OGLUM09G03740 Oryza glumaepatula OGLUM09G03740 N
OLONG_006157 Oryza longistaminata OLONG_006157 N
OLONG_008046 Oryza longistaminata OLONG_008046 N
OLONG_010636 Oryza longistaminata OLONG_010636 N
OLONG_014997 Oryza longistaminata OLONG_014997 N
OMERI03G07360 Oryza meridionalis OMERI03G07360 N
OMERI03G23570 Oryza meridionalis OMERI03G23570 N
OMERI07G17220 Oryza meridionalis OMERI07G17220 N
OMERI12G12030 Oryza meridionalis OMERI12G12030 N
ONIVA03G07980 Oryza nivara ONIVA03G07980 N
ONIVA03G27180 Oryza nivara ONIVA03G27180 N
ONIVA07G18960 Oryza nivara ONIVA07G18960 N
ONIVA12G13790 Oryza nivara ONIVA12G13790 N
ONIVA12G15960 Oryza nivara ONIVA12G15960 N
OPUNC03G07300 Oryza punctata OPUNC03G07300 N
OPUNC03G23870 Oryza punctata OPUNC03G23870 N
OPUNC07G19390 Oryza punctata OPUNC07G19390 N
OPUNC12G15720 Oryza punctata OPUNC12G15720 N
orange1.1g036928m.g Citrus sinensis orange1.1g036928m.g N
orange1.1g047654m.g Citrus sinensis orange1.1g047654m.g N
ORGLA03G0073500 Oryza glaberrima ORGLA03G0073500 N
ORGLA03G0242600 Oryza glaberrima ORGLA03G0242600 N
ORGLA12G0149000 Oryza glaberrima ORGLA12G0149000 N
ORUFI03G07580 Oryza rufipogon ORUFI03G07580 N
ORUFI03G27070 Oryza rufipogon ORUFI03G27070 N
ORUFI07G21430 Oryza rufipogon ORUFI07G21430 N
ORUFI12G19280 Oryza rufipogon ORUFI12G19280 N
OS03G0205300 Oryza sativa OS03G0205300 N
OS07G0588400 Oryza sativa OS07G0588400 N
OS12G0589000 Oryza sativa OS12G0589000 N
Pavir.Ba01059 Panicum virgatum Pavir.Ba01059 N
Pavir.Bb01173 Panicum virgatum Pavir.Bb01173 N
Pavir.Ia00352 Panicum virgatum Pavir.Ia00352 N
Pavir.Ia04640 Panicum virgatum Pavir.Ia04640 N
Pavir.Ib00696 Panicum virgatum Pavir.Ib00696 N
Pavir.J00626 Panicum virgatum Pavir.J00626 N
PGSC0003DMG400021526 Solanum tuberosum PGSC0003DMG400021526 N
PGSC0003DMG400036714 Solanum tuberosum PGSC0003DMG400036714 N
PK01802.1 Cannabis sativa PK01802.1 N
Pm005392 Prunus mume Pm005392 N
Pm021172 Prunus mume Pm021172 N
POPTR_0001s30150 Populus trichocarpa POPTR_0001s30150 N
POPTR_0002s12000 Populus trichocarpa POPTR_0002s12000 N
POPTR_0009s09210 Populus trichocarpa POPTR_0009s09210 N
POPTR_0014s01730 Populus trichocarpa POPTR_0014s01730 N
PRUPE_ppa015160mg Prunus persica PRUPE_ppa015160mg N
SapurV1A.0005s0400 Salix purpurea SapurV1A.0005s0400 N
SapurV1A.0019s0320 Salix purpurea SapurV1A.0019s0320 N
SapurV1A.0476s0200 Salix purpurea SapurV1A.0476s0200 N
SapurV1A.0845s0110 Salix purpurea SapurV1A.0845s0110 N
SapurV1A.2301s0020 Salix purpurea SapurV1A.2301s0020 N
Sb01g007160 Sorghum bicolor Sb01g007160 N
Sb02g037990 Sorghum bicolor Sb02g037990 N
Sb05g025230 Sorghum bicolor Sb05g025230 N
SELMODRAFT_404767 Selaginella moellendorffii SELMODRAFT_404767 N
SELMODRAFT_419388 Selaginella moellendorffii SELMODRAFT_419388 N
Si032445m.g Setaria italica Si032445m.g N
Si039720m.g Setaria italica Si039720m.g N
Solyc01g107140.1 Solanum lycopersicum Solyc01g107140.1 N
Solyc04g077960.1 Solanum lycopersicum Solyc04g077960.1 N
TCM_007220 Theobroma cacao TCM_007220 N
TCM_034717 Theobroma cacao TCM_034717 N
Thhalv10003393m.g Eutrema salsugineum Thhalv10003393m.g N
Thhalv10009862m.g Eutrema salsugineum Thhalv10009862m.g N
Thhalv10026786m.g Eutrema salsugineum Thhalv10026786m.g N
Traes_2AS_9A3F73BE3 Triticum aestivum Traes_2AS_9A3F73BE3 N
Traes_2BS_659F9ABB9 Triticum aestivum Traes_2BS_659F9ABB9 N
Traes_2DS_7C9C33E09 Triticum aestivum Traes_2DS_7C9C33E09 N
Traes_4AL_6A6EC9A6A Triticum aestivum Traes_4AL_6A6EC9A6A N
Traes_4AS_7530AAEB4 Triticum aestivum Traes_4AS_7530AAEB4 N
Traes_4BS_9BFCC52AD Triticum aestivum Traes_4BS_9BFCC52AD N
Traes_4DL_61AE80723 Triticum aestivum Traes_4DL_61AE80723 N
Traes_4DS_7488F4608 Triticum aestivum Traes_4DS_7488F4608 N
Traes_5AS_5B9D5E067 Triticum aestivum Traes_5AS_5B9D5E067 N
Traes_5BS_0F8DBB33D Triticum aestivum Traes_5BS_0F8DBB33D N
Traes_5DS_51467BEB4 Triticum aestivum Traes_5DS_51467BEB4 N
TRIUR3_01454 Triticum urartu TRIUR3_01454 N
TRIUR3_17670 Triticum urartu TRIUR3_17670 N
TRIUR3_24341 Triticum urartu TRIUR3_24341 N
VIT_03s0091g00730 Vitis vinifera VIT_03s0091g00730 N
VIT_18s0001g09210 Vitis vinifera VIT_18s0001g09210 N