Pavir.Ba01059 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ba01059 T050676_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba01059.1.p bHLH 201 244

Links

Other bHLH family TFs
Other Panicum virgatum TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G057260 Zea mays GRMZM2G057260 N 0.914
GRMZM2G383841 Zea mays GRMZM2G383841 N 0.914
Sb02g037990 Sorghum bicolor Sb02g037990 N 0.914
Si032445m.g Setaria italica Si032445m.g N 0.914
Pavir.Bb01173 Panicum virgatum Pavir.Bb01173 N 0.914
AMTR_s00164p00062120 Amborella trichopoda AMTR_s00164p00062120 N 0.903
AT2G14760 Arabidopsis thaliana AT2G14760 N 0.903
BHLH85 Arabidopsis thaliana AT4G33880 N 0.903
BGIOSGA010239 Oryza indica BGIOSGA010239 N 0.903
BGIOSGA023988 Oryza indica BGIOSGA023988 N 0.903
BGIOSGA035917 Oryza indica BGIOSGA035917 N 0.903
Bo1g007780 Brassica oleracea Bo1g007780 N 0.903
Bo3g169400 Brassica oleracea Bo3g169400 N 0.903
Bo7g116460 Brassica oleracea Bo7g116460 N 0.903
Bra011476 Brassica rapa Bra011476 N 0.903
Bra034587 Brassica rapa Bra034587 N 0.903
Bra036969 Brassica rapa Bra036969 N 0.903
BRADI1G14600 Brachypodium distachyon BRADI1G14600 N 0.903
BRADI4G03070 Brachypodium distachyon BRADI4G03070 N 0.903
F775_02582 Aegilops tauschii F775_02582 N 0.903
RSL2 Arabidopsis lyrata fgenesh2_kg.7__724__AT4G33880.1 N 0.903
GLYMA10G40350 Glycine max GLYMA10G40350 N 0.903
GLYMA10G40360 Glycine max GLYMA10G40360 N 0.903
GLYMA14G09781 Glycine max GLYMA14G09781 N 0.903
GLYMA17G35423 Glycine max GLYMA17G35423 N 0.903
GLYMA20G26980 Glycine max GLYMA20G26980 N 0.903
GLYMA20G26991 Glycine max GLYMA20G26991 N 0.903
GRMZM2G395549 Zea mays GRMZM2G395549 N 0.903
GSMUA_Achr3G18870_001 Musa acuminata GSMUA_Achr3G18870_001 N 0.903
GSMUA_Achr4G23240_001 Musa acuminata GSMUA_Achr4G23240_001 N 0.903
GSMUA_Achr6G07760_001 Musa acuminata GSMUA_Achr6G07760_001 N 0.903
LPERR03G21650 Leersia perrieri LPERR03G21650 N 0.903
LPERR07G17840 Leersia perrieri LPERR07G17840 N 0.903
LPERR12G14550 Leersia perrieri LPERR12G14550 N 0.903
MLOC_60270 Hordeum vulgare MLOC_60270 N 0.903
MLOC_76486 Hordeum vulgare MLOC_76486 N 0.903
MTR_1g018090 Medicago truncatula MTR_1g018090 N 0.903
MTR_1g106460 Medicago truncatula MTR_1g106460 N 0.903
MTR_1g106480 Medicago truncatula MTR_1g106480 N 0.903
MTR_5g005110 Medicago truncatula MTR_5g005110 N 0.903
OB03G34210 Oryza brachyantha OB03G34210 N 0.903
OB07G26210 Oryza brachyantha OB07G26210 N 0.903
OB12G24200 Oryza brachyantha OB12G24200 N 0.903
OBART03G26170 Oryza barthii OBART03G26170 N 0.903
OBART12G17400 Oryza barthii OBART12G17400 N 0.903
OGLUM03G27050 Oryza glumaepatula OGLUM03G27050 N 0.903
OGLUM07G20330 Oryza glumaepatula OGLUM07G20330 N 0.903
OGLUM09G03740 Oryza glumaepatula OGLUM09G03740 N 0.903
OLONG_006157 Oryza longistaminata OLONG_006157 N 0.903
OLONG_010636 Oryza longistaminata OLONG_010636 N 0.903
OLONG_014997 Oryza longistaminata OLONG_014997 N 0.903
OMERI03G23570 Oryza meridionalis OMERI03G23570 N 0.903
OMERI07G17220 Oryza meridionalis OMERI07G17220 N 0.903
OMERI12G12030 Oryza meridionalis OMERI12G12030 N 0.903
ONIVA03G27180 Oryza nivara ONIVA03G27180 N 0.903
ONIVA07G18960 Oryza nivara ONIVA07G18960 N 0.903
ONIVA12G15960 Oryza nivara ONIVA12G15960 N 0.903
OPUNC03G23870 Oryza punctata OPUNC03G23870 N 0.903
OPUNC07G19390 Oryza punctata OPUNC07G19390 N 0.903
OPUNC12G15720 Oryza punctata OPUNC12G15720 N 0.903
ORGLA03G0242600 Oryza glaberrima ORGLA03G0242600 N 0.903
ORGLA12G0149000 Oryza glaberrima ORGLA12G0149000 N 0.903
ORUFI03G27070 Oryza rufipogon ORUFI03G27070 N 0.903
ORUFI07G21430 Oryza rufipogon ORUFI07G21430 N 0.903
ORUFI12G19280 Oryza rufipogon ORUFI12G19280 N 0.903
OS07G0588400 Oryza sativa OS07G0588400 N 0.903
OS12G0589000 Oryza sativa OS12G0589000 N 0.903
PGSC0003DMG400021526 Solanum tuberosum PGSC0003DMG400021526 N 0.903
PGSC0003DMG400036714 Solanum tuberosum PGSC0003DMG400036714 N 0.903
POPTR_0001s30150 Populus trichocarpa POPTR_0001s30150 N 0.903
POPTR_0002s12000 Populus trichocarpa POPTR_0002s12000 N 0.903
POPTR_0009s09210 Populus trichocarpa POPTR_0009s09210 N 0.903
POPTR_0014s01730 Populus trichocarpa POPTR_0014s01730 N 0.903
PRUPE_ppa015160mg Prunus persica PRUPE_ppa015160mg N 0.903
Sb01g007160 Sorghum bicolor Sb01g007160 N 0.903
Si039720m.g Setaria italica Si039720m.g N 0.903
Solyc01g107140.1 Solanum lycopersicum Solyc01g107140.1 N 0.903
Solyc04g077960.1 Solanum lycopersicum Solyc04g077960.1 N 0.903
TCM_007220 Theobroma cacao TCM_007220 N 0.903
TCM_034717 Theobroma cacao TCM_034717 N 0.903
Traes_5AS_5B9D5E067 Triticum aestivum Traes_5AS_5B9D5E067 N 0.903
Traes_5DS_51467BEB4 Triticum aestivum Traes_5DS_51467BEB4 N 0.903
TRIUR3_24341 Triticum urartu TRIUR3_24341 N 0.903
VIT_03s0091g00730 Vitis vinifera VIT_03s0091g00730 N 0.903
VIT_18s0001g09210 Vitis vinifera VIT_18s0001g09210 N 0.903
Ca_01588 Cicer arietinum Ca_01588 N 0.903
Ca_05644 Cicer arietinum Ca_05644 N 0.903
Ca_11909 Cicer arietinum Ca_11909 N 0.903
Ca_18366 Cicer arietinum Ca_18366 N 0.903
Cla016346 Citrullus lanatus Cla016346 N 0.903
Cla020918 Citrullus lanatus Cla020918 N 0.903
Cla022968 Citrullus lanatus Cla022968 N 0.903
Pm005392 Prunus mume Pm005392 N 0.903
28152.m000914 Ricinus communis 28152.m000914 N 0.903
30170.m013749 Ricinus communis 30170.m013749 N 0.903
cassava14986.m1 Manihot esculenta cassava14986.m1 N 0.903
cassava20440.m1 Manihot esculenta cassava20440.m1 N 0.903
cassava25589.m1 Manihot esculenta cassava25589.m1 N 0.903
cassava38950.m1 Manihot esculenta cassava38950.m1 N 0.903
Cucsa.097490 Cucumis sativus Cucsa.097490 N 0.903
Cucsa.219180 Cucumis sativus Cucsa.219180 N 0.903
Cucsa.352750 Cucumis sativus Cucsa.352750 N 0.903
mgf018282m Mimulus guttatus mgf018282m N 0.903
mgf022238m Mimulus guttatus mgf022238m N 0.903
mgf024863m Mimulus guttatus mgf024863m N 0.903
Aquca_017_00066 Aquilegia coerulea Aquca_017_00066 N 0.903
Aquca_042_00162 Aquilegia coerulea Aquca_042_00162 N 0.903
Aquca_042_00163 Aquilegia coerulea Aquca_042_00163 N 0.903
Bostr.2199s0029 Boechera stricta Bostr.2199s0029 N 0.903
Bostr.7867s1234 Boechera stricta Bostr.7867s1234 N 0.903
Cagra.1305s0010 Capsella grandiflora Cagra.1305s0010 N 0.903
Cagra.9228s0001 Capsella grandiflora Cagra.9228s0001 N 0.903
Carubv10006623m.g Capsella rubella Carubv10006623m.g N 0.903
Carubv10015484m.g Capsella rubella Carubv10015484m.g N 0.903
Ciclev10003450m.g Citrus clementina Ciclev10003450m.g N 0.903
Ciclev10030309m.g Citrus clementina Ciclev10030309m.g N 0.903
Eucgr.I01069 Eucalyptus grandis Eucgr.I01069 N 0.903
evm.TU.supercontig_106.57 Carica papaya evm.TU.supercontig_106.57 N 0.903
evm.TU.supercontig_142.14 Carica papaya evm.TU.supercontig_142.14 N 0.903
gene02560-v1.0-hybrid Fragaria vesca gene02560-v1.0-hybrid N 0.903
Gorai.005G231900 Gossypium raimondii Gorai.005G231900 N 0.903
Gorai.009G219100 Gossypium raimondii Gorai.009G219100 N 0.903
Gorai.010G025400 Gossypium raimondii Gorai.010G025400 N 0.903
Lus10001068.g Linum usitatissimum Lus10001068.g N 0.903
Lus10004315.g Linum usitatissimum Lus10004315.g N 0.903
MDP0000145825 Malus domestica MDP0000145825 N 0.903
MDP0000198037 Malus domestica MDP0000198037 N 0.903
MDP0000573178 Malus domestica MDP0000573178 N 0.903
orange1.1g036928m.g Citrus sinensis orange1.1g036928m.g N 0.903
orange1.1g047654m.g Citrus sinensis orange1.1g047654m.g N 0.903
Pavir.Ia00352 Panicum virgatum Pavir.Ia00352 N 0.903
Pavir.Ia04640 Panicum virgatum Pavir.Ia04640 N 0.903
Pavir.Ib00696 Panicum virgatum Pavir.Ib00696 N 0.903
Pavir.J00626 Panicum virgatum Pavir.J00626 N 0.903
SapurV1A.0005s0400 Salix purpurea SapurV1A.0005s0400 N 0.903
SapurV1A.0019s0320 Salix purpurea SapurV1A.0019s0320 N 0.903
SapurV1A.0476s0200 Salix purpurea SapurV1A.0476s0200 N 0.903
Thhalv10026786m.g Eutrema salsugineum Thhalv10026786m.g N 0.903
PK01802.1 Cannabis sativa PK01802.1 N 0.903
chr1.CM0088.610.nd Lotus japonicus chr1.CM0088.610.nd N 0.903
BGIOSGA011251 Oryza indica BGIOSGA011251 N 0.901
LPERR11G16970 Leersia perrieri LPERR11G16970 N 0.901
OB03G17860 Oryza brachyantha OB03G17860 N 0.901
OBART03G07520 Oryza barthii OBART03G07520 N 0.901
OGLUM03G07680 Oryza glumaepatula OGLUM03G07680 N 0.901
OLONG_008046 Oryza longistaminata OLONG_008046 N 0.901
OMERI03G07360 Oryza meridionalis OMERI03G07360 N 0.901
ONIVA03G07980 Oryza nivara ONIVA03G07980 N 0.901
OPUNC03G07300 Oryza punctata OPUNC03G07300 N 0.901
ORGLA03G0073500 Oryza glaberrima ORGLA03G0073500 N 0.901
ORUFI03G07580 Oryza rufipogon ORUFI03G07580 N 0.901
OS03G0205300 Oryza sativa OS03G0205300 N 0.901
PGSC0003DMG400039299 Solanum tuberosum PGSC0003DMG400039299 N 0.901
Sb05g025230 Sorghum bicolor Sb05g025230 N 0.901
Eucgr.F02259 Eucalyptus grandis Eucgr.F02259 N 0.901
Eucgr.G01234 Eucalyptus grandis Eucgr.G01234 N 0.901
GSMUA_Achr2G17130_001 Musa acuminata GSMUA_Achr2G17130_001 N 0.900
fgenesh2_kg.3__3067__AT2G14760.1 Arabidopsis lyrata fgenesh2_kg.3__3067__AT2G14760.1 N 0.890
GLYMA04G04801 Glycine max GLYMA04G04801 N 0.883
GSMUA_Achr9G09600_001 Musa acuminata GSMUA_Achr9G09600_001 N 0.883
Thhalv10003393m.g Eutrema salsugineum Thhalv10003393m.g N 0.883
GSMUA_AchrUn_randomG07080_001 Musa acuminata GSMUA_AchrUn_randomG07080_001 N 0.879
Traes_5BS_0F8DBB33D Triticum aestivum Traes_5BS_0F8DBB33D N 0.879
GSMUA_Achr6G16890_001 Musa acuminata GSMUA_Achr6G16890_001 N 0.876
BRADI1G22960 Brachypodium distachyon BRADI1G22960 N 0.871
F775_02706 Aegilops tauschii F775_02706 N 0.871
MLOC_74022 Hordeum vulgare MLOC_74022 N 0.871
Traes_2AS_9A3F73BE3 Triticum aestivum Traes_2AS_9A3F73BE3 N 0.871
Traes_2BS_659F9ABB9 Triticum aestivum Traes_2BS_659F9ABB9 N 0.871
Traes_2DS_7C9C33E09 Triticum aestivum Traes_2DS_7C9C33E09 N 0.871
TRIUR3_17670 Triticum urartu TRIUR3_17670 N 0.871
BHLH54 Arabidopsis thaliana AT1G27740 N 0.868
Bo3g142890 Brassica oleracea Bo3g142890 N 0.868
Bo5g052310 Brassica oleracea Bo5g052310 N 0.868
Bo7g048630 Brassica oleracea Bo7g048630 N 0.868
Bra010921 Brassica rapa Bra010921 N 0.868
Bra030063 Brassica rapa Bra030063 N 0.868
Bra032846 Brassica rapa Bra032846 N 0.868
F775_27628 Aegilops tauschii F775_27628 N 0.868
RSL4 Arabidopsis lyrata fgenesh2_kg.1__2933__AT1G27740.1 N 0.868
Traes_4AL_6A6EC9A6A Triticum aestivum Traes_4AL_6A6EC9A6A N 0.868
Traes_4BS_9BFCC52AD Triticum aestivum Traes_4BS_9BFCC52AD N 0.868
Traes_4DS_7488F4608 Triticum aestivum Traes_4DS_7488F4608 N 0.868
Pm021172 Prunus mume Pm021172 N 0.868
mgf019332m Mimulus guttatus mgf019332m N 0.868
Bostr.15697s0100 Boechera stricta Bostr.15697s0100 N 0.868
Cagra.1822s0081 Capsella grandiflora Cagra.1822s0081 N 0.868
Carubv10011072m.g Capsella rubella Carubv10011072m.g N 0.868
gene25555-v1.0-hybrid Fragaria vesca gene25555-v1.0-hybrid N 0.868
Thhalv10009862m.g Eutrema salsugineum Thhalv10009862m.g N 0.868
chr5.CM0096.500.nd Lotus japonicus chr5.CM0096.500.nd N 0.868
chr5.CM0200.480.nc Lotus japonicus chr5.CM0200.480.nc N 0.868
MDP0000946515 Malus domestica MDP0000946515 N 0.867
Al_scaffold_0797_1 Arabidopsis lyrata Al_scaffold_0797_1 N 0.861
BHLH139 Arabidopsis thaliana AT5G43175 N 0.861
fgenesh2_kg.8__503__AT5G43175.1 Arabidopsis lyrata fgenesh2_kg.8__503__AT5G43175.1 N 0.861
Bostr.3148s0158 Boechera stricta Bostr.3148s0158 N 0.861
Cagra.1103s0007 Capsella grandiflora Cagra.1103s0007 N 0.861
Carubv10028625m.g Capsella rubella Carubv10028625m.g N 0.861
SapurV1A.0845s0110 Salix purpurea SapurV1A.0845s0110 N 0.857
SapurV1A.2301s0020 Salix purpurea SapurV1A.2301s0020 N 0.857
LPERR12G11190 Leersia perrieri LPERR12G11190 N 0.852
ONIVA12G13790 Oryza nivara ONIVA12G13790 N 0.852
MTR_3g103030 Medicago truncatula MTR_3g103030 N 0.846
SELMODRAFT_404767 Selaginella moellendorffii SELMODRAFT_404767 N 0.845
SELMODRAFT_419388 Selaginella moellendorffii SELMODRAFT_419388 N 0.845
MDP0000131874 Malus domestica MDP0000131874 N 0.845