Pavir.Eb01119 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.Eb01119 T356744_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY65
M07372_2.00 		Arabidopsis thaliana
NWWAGTCAACG
CGTTGACTWWN		 Dap-seq
OMalley et al.(2016)
WRKY65_col_a 		0.885 0.729
WRKY65
M07373_2.00 		Arabidopsis thaliana
NAAAGTCAACGN
NCGTTGACTTTN		 Dap-seq
OMalley et al.(2016)
WRKY65_colamp_a 		0.885 0.729
WRKY14
M00731_2.00 		Arabidopsis thaliana
NRGTCAAMNN
NNKTTGACYN		 PBM
Chang et al.(2013)
pTH7570 		0.882 0.729
WRKY14
M07375_2.00 		Arabidopsis thaliana
NAAAGTCAACGNN
NNCGTTGACTTTN		 Dap-seq
OMalley et al.(2016)
WRKY14_col_a 		0.882 0.729
WRKY14
M07376_2.00 		Arabidopsis thaliana
NAAAGTCAACGNH
DNCGTTGACTTTN		 Dap-seq
OMalley et al.(2016)
WRKY14_colamp_a 		0.882 0.729
WRKY27
M02566_2.00 		Arabidopsis thaliana
NNGTCHDNN
NNHDGACNN		 PBM
Weirauch et al.(2014)
pTH8188 		0.882 0.746
WRKY27
M07430_2.00 		Arabidopsis thaliana
MAAAGTCAACKNH
DNMGTTGACTTTK		 Dap-seq
OMalley et al.(2016)
WRKY27_col_a 		0.882 0.746
WRKY27
M07431_2.00 		Arabidopsis thaliana
HAAAGTCAACKNH
DNMGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY27_colamp_a 		0.882 0.746
WRKY22
M02557_2.00 		Arabidopsis thaliana
NNNKTMHDNN
NNHDKAMNNN		 PBM
Weirauch et al.(2014)
pTH7320 		0.878 0.746
WRKY22
M07400_2.00 		Arabidopsis thaliana
AAAAGTCAACKNH
DNMGTTGACTTTT		 Dap-seq
OMalley et al.(2016)
WRKY22_colamp_a 		0.878 0.746
WRKY22
M07401_2.00 		Arabidopsis thaliana
NAAAGTCAACKNH
DNMGTTGACTTTN		 Dap-seq
OMalley et al.(2016)
WRKY22_col 		0.878 0.746
WRKY21
M02553_2.00 		Arabidopsis thaliana
NNRGTCAAMN
NKTTGACYNN		 PBM
Weirauch et al.(2014)
pTH7422 		0.867 0.746
WRKY21
M07389_2.00 		Arabidopsis thaliana
HAAAGTCAACNNH
DNNGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY21_colamp_a 		0.867 0.746
WRKY21
M07390_2.00 		Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY21_col 		0.867 0.746
WRKY29
M02558_2.00 		Arabidopsis thaliana
NNNGTCHDNN
NNHDGACNNN		 PBM
Weirauch et al.(2014)
pTH9604 		0.866 0.695
WRKY29
M07410_2.00 		Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY29_col_a 		0.866 0.695
WRKY29
M07411_2.00 		Arabidopsis thaliana
HWWAGTCAAMDNN
NNHKTTGACTWWD		 Dap-seq
OMalley et al.(2016)
WRKY29_colamp_a 		0.866 0.695
Q40828_PETCR
M11467_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRKY_Q2 		0.854 0.678
WRKY11
M02559_2.00 		Arabidopsis thaliana
NDGTCAAHNN
NNDTTGACHN		 PBM
Weirauch et al.(2014)
pTH8091 		0.852 0.661
WRKY11
M07415_2.00 		Arabidopsis thaliana
NHAAAGTCAACBNH
DNVGTTGACTTTDN		 Dap-seq
OMalley et al.(2016)
WRKY11_col_a 		0.852 0.661
WRKY11
M11464_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRKY11_Q2 		0.852 0.661
WRKY15
M02549_2.00 		Arabidopsis thaliana
NRGTCAAMNN
NNKTTGACYN		 PBM
Weirauch et al.(2014)
pTH7602 		0.848 0.644
WRKY15
M07383_2.00 		Arabidopsis thaliana
AAAAGTCAACKN
NMGTTGACTTTT		 Dap-seq
OMalley et al.(2016)
WRKY15_colamp_a 		0.848 0.644
WRKY15
M07384_2.00 		Arabidopsis thaliana
NWAAGTCAACB
VGTTGACTTWN		 Dap-seq
OMalley et al.(2016)
WRKY15_col_b 		0.848 0.644
WRKY17
M02550_2.00 		Arabidopsis thaliana
NNDGTCAAHN
NDTTGACHNN		 PBM
Weirauch et al.(2014)
pTH8088 		0.847 0.644
WRKY17
M07385_2.00 		Arabidopsis thaliana
NHAAAGTCAACRNN
NNYGTTGACTTTDN		 Dap-seq
OMalley et al.(2016)
WRKY17_col_a 		0.847 0.644
WRKY17
M07386_2.00 		Arabidopsis thaliana
NMAAAGTCAACGN
NCGTTGACTTTKN		 Dap-seq
OMalley et al.(2016)
WRKY17_colamp_a 		0.847 0.644
WRKY7
M07412_2.00 		Arabidopsis thaliana
NNDDDNNNNMAAAGTCAACGV
BCGTTGACTTTKNNNNHHHNN		 Dap-seq
OMalley et al.(2016)
WRKY7_colamp_a 		0.845 0.661
WRKY7
M07413_2.00 		Arabidopsis thaliana
NAAAAGTCAACKNN
NNMGTTGACTTTTN		 Dap-seq
OMalley et al.(2016)
WRKY7_col 		0.845 0.661
WRKY48
M02565_2.00 		Arabidopsis thaliana
NNVGTCADNN
NNHTGACBNN		 PBM
Weirauch et al.(2014)
pTH7552 		0.830 0.508
WRKY71
M07374_2.00 		Arabidopsis thaliana
HAAAGTCAAMN
NKTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY71_col_a 		0.827 0.508
WRKY8
M02564_2.00 		Arabidopsis thaliana
NRGTCAAHN
NDTTGACYN		 PBM
Weirauch et al.(2014)
pTH7554 		0.827 0.525
WRKY28
M07406_2.00 		Arabidopsis thaliana
HAAAGTCAAMNNH
DNNKTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY28_col_a 		0.827 0.525
WRKY28
M07407_2.00 		Arabidopsis thaliana
VAAAGTCAAMG
CKTTGACTTTB		 Dap-seq
OMalley et al.(2016)
WRKY28_colamp_a 		0.827 0.525
WRKY8
M07428_2.00 		Arabidopsis thaliana
NAAAAGTCAACRNHW
WDNYGTTGACTTTTN		 Dap-seq
OMalley et al.(2016)
WRKY8_colamp_a 		0.827 0.525
WRKY8
M07429_2.00 		Arabidopsis thaliana
NNVAAAGTCAACRNH
DNYGTTGACTTTBNN		 Dap-seq
OMalley et al.(2016)
WRKY8_col 		0.827 0.525
ZAP1
M00982_2.00 		Arabidopsis thaliana
NRGTCAAN
NTTGACYN		 PBM
Lindemose et al.(2014)
WRKY1 		0.823 0.559
WRKY59
M07382_2.00 		Arabidopsis thaliana
NDWWAGTCAAMN
NKTTGACTWWHN		 Dap-seq
OMalley et al.(2016)
WRKY59_col_a 		0.816 0.492
WRKY57
M02547_2.00 		Arabidopsis thaliana
NNRGTCAAHN
NDTTGACYNN		 PBM
Weirauch et al.(2014)
pTH7917 		0.816 0.492
WRKY23
M02556_2.00 		Arabidopsis thaliana
RGTCAACG
CGTTGACY		 PBM
Weirauch et al.(2014)
pTH7387 		0.814 0.458
WRKY23
M01089_2.00 		Arabidopsis thaliana
NRGTCAAM
KTTGACYN		 PBM
Sullivan et al.(2014)
pTH7671 		0.814 0.458
fgenesh1_pg.C_Chr_11.0001000193
M02570_2.00 		Ostreococcus tauri
NRGTCARNN
NNYTGACYN		 PBM
Weirauch et al.(2014)
pTH9432 		0.811 0.492
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb01119.1.p WRKY 59 117

Links

Other WRKY family TFs
Other Panicum virgatum TFs

1530 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27805.m000021 Ricinus communis 27805.m000021 I
28118.m000034 Ricinus communis 28118.m000034 I
AC198403.3_FG001 Zea mays AC198403.3_FG001 I
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I
ERF022 Arabidopsis thaliana AT1G33760 I
ERF021 Arabidopsis thaliana AT1G71450 D
BGIOSGA034227 Oryza indica BGIOSGA034227 I
Bo2g072910 Brassica oleracea Bo2g072910 I
Bo5g086680 Brassica oleracea Bo5g086680 I
Bo6g046850 Brassica oleracea Bo6g046850 I
Bo6g094210 Brassica oleracea Bo6g094210 I
Bo6g113020 Brassica oleracea Bo6g113020 I
Bo8g027240 Brassica oleracea Bo8g027240 I
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I
Bra003924 Brassica rapa Bra003924 I
Bra007975 Brassica rapa Bra007975 I
Bra010210 Brassica rapa Bra010210 I
Bra016136 Brassica rapa Bra016136 I
Bra028009 Brassica rapa Bra028009 I
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I
Carubv10011715m.g Capsella rubella Carubv10011715m.g I
Carubv10012215m.g Capsella rubella Carubv10012215m.g I
Carubv10022349m.g Capsella rubella Carubv10022349m.g I
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I
cassava45911.m1 Manihot esculenta cassava45911.m1 I
cassava8552.m1 Manihot esculenta cassava8552.m1 I
Ca_15064 Cicer arietinum Ca_15064 I
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I
Cla012661 Citrullus lanatus Cla012661 I
Cla012665 Citrullus lanatus Cla012665 I
Cucsa.237150 Cucumis sativus Cucsa.237150 I
Cucsa.237170 Cucumis sativus Cucsa.237170 I
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I
F775_17299 Aegilops tauschii F775_17299 I
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I
GLYMA01G44130 Glycine max GLYMA01G44130 I
GLYMA01G44140 Glycine max GLYMA01G44140 I
GLYMA11G01640 Glycine max GLYMA11G01640 I
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I
LPERR11G07100 Leersia perrieri LPERR11G07100 I
Lus10002953.g Linum usitatissimum Lus10002953.g I
Lus10006173.g Linum usitatissimum Lus10006173.g I
Lus10041050.g Linum usitatissimum Lus10041050.g I
Lus10041052.g Linum usitatissimum Lus10041052.g N
MDP0000122739 Malus domestica MDP0000122739 I
MDP0000122740 Malus domestica MDP0000122740 I
MDP0000151428 Malus domestica MDP0000151428 I
MDP0000283350 Malus domestica MDP0000283350 I
MLOC_55144 Hordeum vulgare MLOC_55144 I
MTR_5g008550 Medicago truncatula MTR_5g008550 I
MTR_5g008590 Medicago truncatula MTR_5g008590 I
OB11G16300 Oryza brachyantha OB11G16300 I
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I
OMERI11G06840 Oryza meridionalis OMERI11G06840 I
ONIVA11G08160 Oryza nivara ONIVA11G08160 I
OPUNC11G07750 Oryza punctata OPUNC11G07750 I
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I
OS11G0242300 Oryza sativa OS11G0242300 I
Pavir.J22217 Panicum virgatum Pavir.J22217 I
Pavir.J26137 Panicum virgatum Pavir.J26137 I
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I
Pm004269 Prunus mume Pm004269 I
Pm004272 Prunus mume Pm004272 I
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I
SapurV1A.0601s0170 Salix purpurea SapurV1A.0601s0170 N
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I
Sb05g007135 Sorghum bicolor Sb05g007135 I
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I
Si026882m.g Setaria italica Si026882m.g I
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I
TCM_036269 Theobroma cacao TCM_036269 I
TCM_036270 Theobroma cacao TCM_036270 I
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I
TRIUR3_32331 Triticum urartu TRIUR3_32331 I
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I