scaffold_803239.1 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 scaffold_803239.1 T005121_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.831 1.000
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.831 1.000
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.721 0.860
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.711 0.860
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.711 0.860
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.702 0.760
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.702 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_803239.1 AP2 114 165

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

257 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF055 Arabidopsis thaliana AT1G36060 D 0.711
RAP2-4 Arabidopsis thaliana AT1G78080 D 0.721
ERF054 Arabidopsis thaliana AT4G28140 D 0.702
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.831
AMTR_s00009p00268560 Amborella trichopoda AMTR_s00009p00268560 I 0.721
AMTR_s00010p00194910 Amborella trichopoda AMTR_s00010p00194910 I 0.721
AMTR_s00089p00102760 Amborella trichopoda AMTR_s00089p00102760 I 0.717
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.716
RAP2-13 Arabidopsis thaliana AT1G22190 I 0.721
ERF060 Arabidopsis thaliana AT4G39780 I 0.708
BGIOSGA011298 Oryza indica BGIOSGA011298 I 0.697
BGIOSGA028650 Oryza indica BGIOSGA028650 I 0.720
BGIOSGA030624 Oryza indica BGIOSGA030624 I 0.722
Bo00790s010 Brassica oleracea Bo00790s010 I 0.756
Bo04101s010 Brassica oleracea Bo04101s010 I 0.711
Bo1g002840 Brassica oleracea Bo1g002840 I 0.713
Bo1g051230 Brassica oleracea Bo1g051230 I 0.689
Bo3g100470 Brassica oleracea Bo3g100470 I 0.762
Bo3g152610 Brassica oleracea Bo3g152610 I 0.708
Bo5g037400 Brassica oleracea Bo5g037400 I 0.721
Bo5g069450 Brassica oleracea Bo5g069450 I 0.711
Bo6g081850 Brassica oleracea Bo6g081850 I 0.717
Bo6g121730 Brassica oleracea Bo6g121730 I 0.721
Bo7g111910 Brassica oleracea Bo7g111910 I 0.682
Bo7g119000 Brassica oleracea Bo7g119000 I 0.723
Bo8g054130 Brassica oleracea Bo8g054130 I 0.702
Bra003659 Brassica rapa Bra003659 I 0.707
Bra008343 Brassica rapa Bra008343 I 0.721
Bra010383 Brassica rapa Bra010383 I 0.702
Bra011833 Brassica rapa Bra011833 I 0.711
Bra015634 Brassica rapa Bra015634 I 0.721
Bra017879 Brassica rapa Bra017879 I 0.723
Bra024222 Brassica rapa Bra024222 I 0.682
Bra024357 Brassica rapa Bra024357 I 0.747
Bra024358 Brassica rapa Bra024358 I 0.756
Bra026280 Brassica rapa Bra026280 I 0.696
Bra031371 Brassica rapa Bra031371 I 0.721
Bra031880 Brassica rapa Bra031880 I 0.679
Bra040381 Brassica rapa Bra040381 I 0.711
BRADI1G71740 Brachypodium distachyon BRADI1G71740 I 0.681
BRADI3G24000 Brachypodium distachyon BRADI3G24000 I 0.700
BRADI3G35560 Brachypodium distachyon BRADI3G35560 I 0.716
BRADI4G29010 Brachypodium distachyon BRADI4G29010 I 0.722
fgenesh2_kg.1__2408__AT1G22190.1 Arabidopsis lyrata fgenesh2_kg.1__2408__AT1G22190.1 I 0.721
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I 0.711
RAP2.4 Arabidopsis lyrata fgenesh2_kg.2__2105__AT1G78080.1 I 0.721
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I 0.702
fgenesh2_kg.7__195__AT4G39780.1 Arabidopsis lyrata fgenesh2_kg.7__195__AT4G39780.1 I 0.708
GLYMA04G11290 Glycine max GLYMA04G11290 I 0.721
GLYMA05G31370 Glycine max GLYMA05G31370 I 0.705
GLYMA06G11010 Glycine max GLYMA06G11010 I 0.721
GLYMA08G14600 Glycine max GLYMA08G14600 I 0.705
GLYMA13G01930 Glycine max GLYMA13G01930 I 0.714
GLYMA14G34590 Glycine max GLYMA14G34590 I 0.714
GLYMA18G02170 Glycine max GLYMA18G02170 I 0.705
GRMZM2G003466 Zea mays GRMZM2G003466 I 0.702
GRMZM2G039870 Zea mays GRMZM2G039870 I 0.696
GRMZM2G061487 Zea mays GRMZM2G061487 I 0.689
GRMZM2G100982 Zea mays GRMZM2G100982 I 0.687
GRMZM2G113060 Zea mays GRMZM2G113060 I 0.697
GRMZM2G141679 Zea mays GRMZM2G141679 I 0.722
GRMZM5G846057 Zea mays GRMZM5G846057 I 0.687
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I 0.711
GSMUA_Achr10G30440_001 Musa acuminata GSMUA_Achr10G30440_001 I 0.721
GSMUA_Achr3G01650_001 Musa acuminata GSMUA_Achr3G01650_001 I 0.701
GSMUA_Achr3G04360_001 Musa acuminata GSMUA_Achr3G04360_001 I 0.713
GSMUA_Achr4G26080_001 Musa acuminata GSMUA_Achr4G26080_001 I 0.678
GSMUA_Achr9G12950_001 Musa acuminata GSMUA_Achr9G12950_001 I 0.718
GSMUA_AchrUn_randomG20840_001 Musa acuminata GSMUA_AchrUn_randomG20840_001 I 0.721
LPERR03G05980 Leersia perrieri LPERR03G05980 I 0.693
LPERR06G07210 Leersia perrieri LPERR06G07210 I 0.679
LPERR08G11750 Leersia perrieri LPERR08G11750 I 0.720
LPERR09G05410 Leersia perrieri LPERR09G05410 I 0.722
MTR_3g074130 Medicago truncatula MTR_3g074130 I 0.721
MTR_5g062700 Medicago truncatula MTR_5g062700 I 0.714
MTR_8g090350 Medicago truncatula MTR_8g090350 I 0.710
OB09G15200 Oryza brachyantha OB09G15200 I 0.722
OBART08G14280 Oryza barthii OBART08G14280 I 0.720
OBART09G07840 Oryza barthii OBART09G07840 I 0.690
OGLUM03G06750 Oryza glumaepatula OGLUM03G06750 I 0.697
OGLUM08G15030 Oryza glumaepatula OGLUM08G15030 I 0.720
OGLUM09G08150 Oryza glumaepatula OGLUM09G08150 I 0.722
OMERI03G06570 Oryza meridionalis OMERI03G06570 I 0.697
OMERI09G06210 Oryza meridionalis OMERI09G06210 I 0.722
OMERI09G06220 Oryza meridionalis OMERI09G06220 I 0.722
ONIVA03G06360 Oryza nivara ONIVA03G06360 I 0.697
ONIVA08G15160 Oryza nivara ONIVA08G15160 I 0.720
ONIVA09G06980 Oryza nivara ONIVA09G06980 I 0.722
OPUNC03G06400 Oryza punctata OPUNC03G06400 I 0.697
OPUNC08G13450 Oryza punctata OPUNC08G13450 I 0.720
OPUNC09G06680 Oryza punctata OPUNC09G06680 I 0.722
ORGLA03G0064600 Oryza glaberrima ORGLA03G0064600 I 0.697
ORGLA08G0124900 Oryza glaberrima ORGLA08G0124900 I 0.720
ORGLA09G0057100 Oryza glaberrima ORGLA09G0057100 I 0.722
ORUFI03G06570 Oryza rufipogon ORUFI03G06570 I 0.697
ORUFI08G16150 Oryza rufipogon ORUFI08G16150 I 0.720
ORUFI09G08380 Oryza rufipogon ORUFI09G08380 I 0.722
OS03G0191900 Oryza sativa OS03G0191900 I 0.697
OS08G0408500 Oryza sativa OS08G0408500 I 0.720
PGSC0003DMG400008538 Solanum tuberosum PGSC0003DMG400008538 I 0.717
PGSC0003DMG400009475 Solanum tuberosum PGSC0003DMG400009475 I 0.706
PGSC0003DMG400018352 Solanum tuberosum PGSC0003DMG400018352 I 0.685
PGSC0003DMG400020625 Solanum tuberosum PGSC0003DMG400020625 I 0.717
PGSC0003DMG400031294 Solanum tuberosum PGSC0003DMG400031294 I 0.697
POPTR_0002s09480 Populus trichocarpa POPTR_0002s09480 I 0.721
POPTR_0005s07900 Populus trichocarpa POPTR_0005s07900 I 0.713
POPTR_0005s16690 Populus trichocarpa POPTR_0005s16690 I 0.721
POPTR_0007s05690 Populus trichocarpa POPTR_0007s05690 I 0.717
PRUPE_ppa007193mg Prunus persica PRUPE_ppa007193mg I 0.721
PRUPE_ppa008234mg Prunus persica PRUPE_ppa008234mg I 0.721
PRUPE_ppa010345mg Prunus persica PRUPE_ppa010345mg I 0.685
PRUPE_ppa020676mg Prunus persica PRUPE_ppa020676mg I 0.721
Sb01g044410 Sorghum bicolor Sb01g044410 I 0.702
Sb02g023230 Sorghum bicolor Sb02g023230 I 0.722
Sb07g020090 Sorghum bicolor Sb07g020090 I 0.722
scaffold_400172.1 Arabidopsis lyrata scaffold_400172.1 I 0.715
SELMODRAFT_104980 Selaginella moellendorffii SELMODRAFT_104980 I 0.730
SELMODRAFT_15839 Selaginella moellendorffii SELMODRAFT_15839 I 0.686
SELMODRAFT_73149 Selaginella moellendorffii SELMODRAFT_73149 I 0.716
Si030684m.g Setaria italica Si030684m.g I 0.722
Si036827m.g Setaria italica Si036827m.g I 0.702
Si036893m.g Setaria italica Si036893m.g I 0.696
Solyc04g054910.2 Solanum lycopersicum Solyc04g054910.2 I 0.717
Solyc04g072900.1 Solanum lycopersicum Solyc04g072900.1 I 0.706
Solyc07g054220.1 Solanum lycopersicum Solyc07g054220.1 I 0.685
Solyc09g091950.1 Solanum lycopersicum Solyc09g091950.1 I 0.697
Solyc12g056980.1 Solanum lycopersicum Solyc12g056980.1 I 0.717
TCM_001147 Theobroma cacao TCM_001147 I 0.717
TCM_020321 Theobroma cacao TCM_020321 I 0.690
TCM_034939 Theobroma cacao TCM_034939 I 0.721
Traes_4AS_1E79E1072 Triticum aestivum Traes_4AS_1E79E1072 I 0.691
Traes_4BL_71E35BBC1 Triticum aestivum Traes_4BL_71E35BBC1 I 0.691
Traes_5BL_4D65B66E2 Triticum aestivum Traes_5BL_4D65B66E2 I 0.722
VIT_00s0662g00030 Vitis vinifera VIT_00s0662g00030 I 0.707
VIT_00s0662g00040 Vitis vinifera VIT_00s0662g00040 I 0.707
VIT_05s0029g00140 Vitis vinifera VIT_05s0029g00140 I 0.691
VIT_18s0001g05250 Vitis vinifera VIT_18s0001g05250 I 0.721
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.738
Ca_09578 Cicer arietinum Ca_09578 I 0.710
Ca_16631 Cicer arietinum Ca_16631 I 0.711
Ca_23799 Cicer arietinum Ca_23799 I 0.723
Cla003007 Citrullus lanatus Cla003007 I 0.686
Cla014376 Citrullus lanatus Cla014376 I 0.721
Cla022420 Citrullus lanatus Cla022420 I 0.721
Cla023489 Citrullus lanatus Cla023489 I 0.711
Pm002052 Prunus mume Pm002052 I 0.721
Pm004824 Prunus mume Pm004824 I 0.721
Pm009494 Prunus mume Pm009494 I 0.695
28206.m000104 Ricinus communis 28206.m000104 I 0.717
29904.m002941 Ricinus communis 29904.m002941 I 0.699
29908.m006005 Ricinus communis 29908.m006005 I 0.721
cassava10153.m1 Manihot esculenta cassava10153.m1 I 0.721
cassava14392.m1 Manihot esculenta cassava14392.m1 I 0.679
cassava23925.valid.m1 Manihot esculenta cassava23925.valid.m1 I 0.717
cassava27742.m1 Manihot esculenta cassava27742.m1 I 0.699
cassava31195.valid.m1 Manihot esculenta cassava31195.valid.m1 I 0.717
cassava36179.valid.m1 Manihot esculenta cassava36179.valid.m1 I 0.719
Cucsa.064390 Cucumis sativus Cucsa.064390 I 0.711
Cucsa.104510 Cucumis sativus Cucsa.104510 I 0.730
Cucsa.154520 Cucumis sativus Cucsa.154520 I 0.721
Cucsa.193930 Cucumis sativus Cucsa.193930 I 0.686
e_gw1.187.17.1 Physcomitrella patens e_gw1.187.17.1 I 0.713
e_gw1.335.26.1 Physcomitrella patens e_gw1.335.26.1 I 0.720
mgf002388m Mimulus guttatus mgf002388m I 0.721
mgf012639m Mimulus guttatus mgf012639m I 0.741
mgf016403m Mimulus guttatus mgf016403m I 0.686
mgf021372m Mimulus guttatus mgf021372m I 0.695
mgf022495m Mimulus guttatus mgf022495m I 0.684
mgf023311m Mimulus guttatus mgf023311m I 0.717
Aquca_014_00591 Aquilegia coerulea Aquca_014_00591 I 0.717
Aquca_014_00592 Aquilegia coerulea Aquca_014_00592 I 0.721
Aquca_034_00155 Aquilegia coerulea Aquca_034_00155 I 0.700
Bostr.0568s0279 Boechera stricta Bostr.0568s0279 I 0.792
Bostr.12659s0070 Boechera stricta Bostr.12659s0070 I 0.721
Bostr.20129s0241 Boechera stricta Bostr.20129s0241 I 0.721
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I 0.711
Bostr.25542s0167 Boechera stricta Bostr.25542s0167 I 0.708
Bostr.5022s0013 Boechera stricta Bostr.5022s0013 I 0.702
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I 0.702
Bostr.7903s0066 Boechera stricta Bostr.7903s0066 I 0.693
Cagra.0096s0029 Capsella grandiflora Cagra.0096s0029 I 0.721
Cagra.0917s0073 Capsella grandiflora Cagra.0917s0073 I 0.792
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I 0.702
Cagra.1707s0001 Capsella grandiflora Cagra.1707s0001 I 0.711
Cagra.5414s0001 Capsella grandiflora Cagra.5414s0001 I 0.705
Cagra.8551s0004 Capsella grandiflora Cagra.8551s0004 I 0.693
Carubv10005203m.g Capsella rubella Carubv10005203m.g I 0.702
Carubv10007787m.g Capsella rubella Carubv10007787m.g I 0.705
Carubv10009949m.g Capsella rubella Carubv10009949m.g I 0.711
Carubv10012538m.g Capsella rubella Carubv10012538m.g I 0.711
Carubv10014129m.g Capsella rubella Carubv10014129m.g I 0.693
Carubv10020567m.g Capsella rubella Carubv10020567m.g I 0.721
Carubv10026925m.g Capsella rubella Carubv10026925m.g I 0.792
Ciclev10001563m.g Citrus clementina Ciclev10001563m.g I 0.721
Ciclev10007069m.g Citrus clementina Ciclev10007069m.g I 0.695
Ciclev10025961m.g Citrus clementina Ciclev10025961m.g I 0.726
Eucgr.F00497 Eucalyptus grandis Eucgr.F00497 I 0.714
Eucgr.F02440 Eucalyptus grandis Eucgr.F02440 I 0.721
Eucgr.H02782 Eucalyptus grandis Eucgr.H02782 I 0.702
Eucgr.I00422 Eucalyptus grandis Eucgr.I00422 I 0.723
Eucgr.L03532 Eucalyptus grandis Eucgr.L03532 I 0.723
evm.TU.supercontig_36.112 Carica papaya evm.TU.supercontig_36.112 I 0.721
evm.TU.supercontig_996.1 Carica papaya evm.TU.supercontig_996.1 I 0.721
gene06669-v1.0-hybrid Fragaria vesca gene06669-v1.0-hybrid I 0.690
gene16350-v1.0-hybrid Fragaria vesca gene16350-v1.0-hybrid I 0.731
gene22114-v1.0-hybrid Fragaria vesca gene22114-v1.0-hybrid I 0.721
Gorai.003G038200 Gossypium raimondii Gorai.003G038200 I 0.717
Gorai.005G093500 Gossypium raimondii Gorai.005G093500 I 0.698
Gorai.006G207800 Gossypium raimondii Gorai.006G207800 I 0.692
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I 0.707
Gorai.008G253900 Gossypium raimondii Gorai.008G253900 I 0.702
Gorai.009G238800 Gossypium raimondii Gorai.009G238800 I 0.721
Gorai.010G043200 Gossypium raimondii Gorai.010G043200 I 0.721
Gorai.011G157500 Gossypium raimondii Gorai.011G157500 I 0.695
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.715
Lus10000582.g Linum usitatissimum Lus10000582.g I 0.716
Lus10007124.g Linum usitatissimum Lus10007124.g I 0.683
Lus10016669.g Linum usitatissimum Lus10016669.g I 0.686
Lus10016801.g Linum usitatissimum Lus10016801.g I 0.730
Lus10019665.g Linum usitatissimum Lus10019665.g I 0.716
Lus10020913.g Linum usitatissimum Lus10020913.g I 0.721
Lus10022497.g Linum usitatissimum Lus10022497.g I 0.715
Lus10033463.g Linum usitatissimum Lus10033463.g I 0.721
MDP0000246184 Malus domestica MDP0000246184 I 0.690
MDP0000313476 Malus domestica MDP0000313476 I 0.721
MDP0000453797 Malus domestica MDP0000453797 I 0.711
MDP0000683814 Malus domestica MDP0000683814 I 0.711
MDP0000865032 Malus domestica MDP0000865032 I 0.711
orange1.1g015775m.g Citrus sinensis orange1.1g015775m.g I 0.695
orange1.1g017798m.g Citrus sinensis orange1.1g017798m.g I 0.721
orange1.1g018103m.g Citrus sinensis orange1.1g018103m.g I 0.726
Pavir.Ba02199 Panicum virgatum Pavir.Ba02199 I 0.722
Pavir.Bb01980 Panicum virgatum Pavir.Bb01980 I 0.722
Pavir.Fa01600 Panicum virgatum Pavir.Fa01600 I 0.722
Pavir.Fb01192 Panicum virgatum Pavir.Fb01192 I 0.722
Pavir.Ia02495 Panicum virgatum Pavir.Ia02495 I 0.687
Pavir.Ia04894 Panicum virgatum Pavir.Ia04894 I 0.702
Pavir.Ib02920 Panicum virgatum Pavir.Ib02920 I 0.687
Pavir.J13316 Panicum virgatum Pavir.J13316 I 0.712
Pavir.J25956 Panicum virgatum Pavir.J25956 I 0.722
SapurV1A.0010s0170 Salix purpurea SapurV1A.0010s0170 I 0.721
SapurV1A.0075s0120 Salix purpurea SapurV1A.0075s0120 I 0.717
SapurV1A.0335s0040 Salix purpurea SapurV1A.0335s0040 I 0.719
SapurV1A.0684s0120 Salix purpurea SapurV1A.0684s0120 I 0.717
SapurV1A.1542s0030 Salix purpurea SapurV1A.1542s0030 I 0.699
SapurV1A.6751s0010 Salix purpurea SapurV1A.6751s0010 I 0.699
Thhalv10005326m.g Eutrema salsugineum Thhalv10005326m.g I 0.752
Thhalv10008326m.g Eutrema salsugineum Thhalv10008326m.g I 0.721
Thhalv10018771m.g Eutrema salsugineum Thhalv10018771m.g I 0.721
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I 0.703
Thhalv10025958m.g Eutrema salsugineum Thhalv10025958m.g I 0.723
PK18885.1 Cannabis sativa PK18885.1 I 0.717
PK27482.1 Cannabis sativa PK27482.1 I 0.721
chr2.CM0608.10.nd Lotus japonicus chr2.CM0608.10.nd I 0.723
chr4.CM0307.180.nc Lotus japonicus chr4.CM0307.180.nc I 0.703
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I 0.723
LjSGA_026196.1 Lotus japonicus LjSGA_026196.1 I 0.721