Carubv10023556m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10023556m.g T007913_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.699 0.816
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.699 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023556m AP2 81 132
Carubv10023590m AP2 70 121

Links

Other AP2 family TFs
Other Capsella rubella TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2A Arabidopsis thaliana AT5G05410 D 0.699
TCM_021596 Theobroma cacao TCM_021596 I 0.694
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.743
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.687
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.699
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.699
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I 0.795
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.699
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.699
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.697
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.699
29820.m001008 Ricinus communis 29820.m001008 I 0.699
Solyc06g050520.1 Solanum lycopersicum Solyc06g050520.1 I 0.701
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I 0.707
MTR_7g070220 Medicago truncatula MTR_7g070220 I 0.697
GLYMA18G43750 Glycine max GLYMA18G43750 I 0.711
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.721
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.699
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.678
Bra028759 Brassica rapa Bra028759 I 0.706
Bra005852 Brassica rapa Bra005852 I 0.698
Bo2g006960 Brassica oleracea Bo2g006960 I 0.706