Pavir.J27101 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J27101 T009616_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M09710_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1A_01 		0.851 0.925
DREB1A
M09711_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SED_Q2 		0.851 0.925
Q8GZQ2_MAIZE
M09720_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1A_02 		0.752 0.830
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J27101.1.p AP2 115 168

Links

Other AP2 family TFs
Other Panicum virgatum TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB1A Oryza sativa OS09G0522200 D 0.851
Q8GZQ2_MAIZE Zea mays Q8GZQ2_MAIZE D 0.752
Sb02g030340 Sorghum bicolor Sb02g030340 I 0.890
OPUNC09G15290 Oryza punctata OPUNC09G15290 I 0.851
ORGLA08G0220100 Oryza glaberrima ORGLA08G0220100 I 0.818
ORGLA09G0133100 Oryza glaberrima ORGLA09G0133100 I 0.683
ORUFI09G18200 Oryza rufipogon ORUFI09G18200 I 0.683
ORUFI09G18210 Oryza rufipogon ORUFI09G18210 I 0.851
DREB1H Oryza sativa OS09G0522100 I 0.683
Sb02g030300 Sorghum bicolor Sb02g030300 I 0.697
Sb02g030320 Sorghum bicolor Sb02g030320 I 0.900
Sb02g030330 Sorghum bicolor Sb02g030330 I 0.894
DREB1H Oryza indica BGIOSGA029416 I 0.683
Sb05g006275 Sorghum bicolor Sb05g006275 I 0.891
Si030998m.g Setaria italica Si030998m.g I 0.856
Si031001m.g Setaria italica Si031001m.g I 0.900
Traes_5BL_D16B19610 Triticum aestivum Traes_5BL_D16B19610 I 0.822
Pavir.Ba01280 Panicum virgatum Pavir.Ba01280 I 0.850
Pavir.Ba01281 Panicum virgatum Pavir.Ba01281 I 0.830
Pavir.Fb02246 Panicum virgatum Pavir.Fb02246 I 0.736
Pavir.J03891 Panicum virgatum Pavir.J03891 I 0.856
Pavir.J03892 Panicum virgatum Pavir.J03892 I 0.870
Pavir.J03893 Panicum virgatum Pavir.J03893 I 0.875
OPUNC09G15280 Oryza punctata OPUNC09G15280 I 0.690
BRADI4G35650 Brachypodium distachyon BRADI4G35650 I 0.873
F775_27111 Aegilops tauschii F775_27111 I 0.822
GRMZM2G069082 Zea mays GRMZM2G069082 I 0.750
BRADI4G35610 Brachypodium distachyon BRADI4G35610 I 0.720
BRADI3G57360 Brachypodium distachyon BRADI3G57360 I 0.679
GRMZM2G069126 Zea mays GRMZM2G069126 I 0.843
GRMZM2G069146 Zea mays GRMZM2G069146 I 0.855
DREB1A Oryza indica BGIOSGA029415 I 0.851
GRMZM2G124011 Zea mays GRMZM2G124011 I 0.846
GRMZM2G124037 Zea mays GRMZM2G124037 I 0.756
LPERR09G12950 Leersia perrieri LPERR09G12950 I 0.883
OBART09G16810 Oryza barthii OBART09G16810 I 0.851
OBART09G16830 Oryza barthii OBART09G16830 I 0.776
OGLUM09G17420 Oryza glumaepatula OGLUM09G17420 I 0.683
OGLUM09G17430 Oryza glumaepatula OGLUM09G17430 I 0.851
OMERI09G12480 Oryza meridionalis OMERI09G12480 I 0.690
OMERI09G12490 Oryza meridionalis OMERI09G12490 I 0.851
ONIVA09G17890 Oryza nivara ONIVA09G17890 I 0.683
ONIVA09G17900 Oryza nivara ONIVA09G17900 I 0.851
OPUNC09G15260 Oryza punctata OPUNC09G15260 I 0.747
Pavir.J32829 Panicum virgatum Pavir.J32829 N 0.719
Pavir.Fa00114 Panicum virgatum Pavir.Fa00114 N 0.713
F775_19112 Aegilops tauschii F775_19112 N 0.678
Traes_5BL_5299B6B33 Triticum aestivum Traes_5BL_5299B6B33 N 0.707
Traes_5BL_0C3609EF0 Triticum aestivum Traes_5BL_0C3609EF0 N 0.691
Sb07g025210 Sorghum bicolor Sb07g025210 N 0.712
GRMZM2G175856 Zea mays GRMZM2G175856 N 0.719