Pavir.J28064 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J28064 T009619_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J28064.1.p AP2 20 68

Links

Other AP2 family TFs
Other Panicum virgatum TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.078000 Cucumis sativus Cucsa.078000 N 0.737
Carubv10005663m.g Capsella rubella Carubv10005663m.g N 0.709
Cagra.2997s0002 Capsella grandiflora Cagra.2997s0002 N 0.709
Bostr.2021s0045 Boechera stricta Bostr.2021s0045 N 0.709
mgf007349m Mimulus guttatus mgf007349m N 0.759
mgf003727m Mimulus guttatus mgf003727m N 0.706
mgf003491m Mimulus guttatus mgf003491m N 0.759
estExt_fgenesh1_pg.C_930051 Physcomitrella patens estExt_fgenesh1_pg.C_930051 N 0.690
e_gw1.317.27.1 Physcomitrella patens e_gw1.317.27.1 N 0.720
Cucsa.150110 Cucumis sativus Cucsa.150110 N 0.743
Ciclev10021891m.g Citrus clementina Ciclev10021891m.g N 0.759
cassava6828.valid.m1 Manihot esculenta cassava6828.valid.m1 N 0.752
cassava38073.valid.m1 Manihot esculenta cassava38073.valid.m1 N 0.756
30217.m000254 Ricinus communis 30217.m000254 N 0.677
Pm020315 Prunus mume Pm020315 N 0.759
Cla015151 Citrullus lanatus Cla015151 N 0.737
Cla002744 Citrullus lanatus Cla002744 N 0.755
Ca_17230 Cicer arietinum Ca_17230 N 0.746
Ca_11707 Cicer arietinum Ca_11707 N 0.735
MDP0000129941 Malus domestica MDP0000129941 N 0.752
PDK_20s1512801g001 Phoenix dactylifera PDK_20s1512801g001 N 0.691
chr3.CM0423.200.nd Lotus japonicus chr3.CM0423.200.nd N 0.733
chr1.LjT46N10.100.nd Lotus japonicus chr1.LjT46N10.100.nd N 0.752
PK01824.1 Cannabis sativa PK01824.1 N 0.737
Thhalv10026242m.g Eutrema salsugineum Thhalv10026242m.g N 0.709
Pavir.Aa01947 Panicum virgatum Pavir.Aa01947 N 0.788
orange1.1g025914m.g Citrus sinensis orange1.1g025914m.g N 0.759
MDP0000675982 Malus domestica MDP0000675982 N 0.752
MDP0000300382 Malus domestica MDP0000300382 N 0.752
VIT_00s0184g00010 Vitis vinifera VIT_00s0184g00010 N 0.743
Lus10022769.g Linum usitatissimum Lus10022769.g N 0.762
Lus10011836.g Linum usitatissimum Lus10011836.g N 0.762
Gorai.007G156300 Gossypium raimondii Gorai.007G156300 N 0.756
Gorai.001G231300 Gossypium raimondii Gorai.001G231300 N 0.759
Gorai.001G188300 Gossypium raimondii Gorai.001G188300 N 0.752
Gorai.001G105100 Gossypium raimondii Gorai.001G105100 N 0.759
evm.TU.supercontig_21.106 Carica papaya evm.TU.supercontig_21.106 N 0.759
Eucgr.K02136 Eucalyptus grandis Eucgr.K02136 N 0.698
GLYMA18G33460 Glycine max GLYMA18G33460 N 0.755
OGLUM02G17700 Oryza glumaepatula OGLUM02G17700 N 0.780
OBART02G17450 Oryza barthii OBART02G17450 N 0.780
OB02G25330 Oryza brachyantha OB02G25330 N 0.780
MTR_8g012655 Medicago truncatula MTR_8g012655 N 0.742
MTR_7g055857 Medicago truncatula MTR_7g055857 N 0.736
LPERR02G13930 Leersia perrieri LPERR02G13930 N 0.780
GSMUA_Achr9G01590_001 Musa acuminata GSMUA_Achr9G01590_001 N 0.749
GSMUA_Achr8G00300_001 Musa acuminata GSMUA_Achr8G00300_001 N 0.732
GSMUA_Achr6G06510_001 Musa acuminata GSMUA_Achr6G06510_001 N 0.697
OLONG_009588 Oryza longistaminata OLONG_009588 N 0.764
GLYMA08G46250 Glycine max GLYMA08G46250 N 0.757
F775_30629 Aegilops tauschii F775_30629 N 0.715
BRADI3G43822 Brachypodium distachyon BRADI3G43822 N 0.788
Bra034895 Brassica rapa Bra034895 N 0.709
Bo8g033910 Brassica oleracea Bo8g033910 N 0.709
Bo11579s010 Brassica oleracea Bo11579s010 N 0.699
BGIOSGA008254 Oryza indica BGIOSGA008254 N 0.780
AT4G13040 Arabidopsis thaliana AT4G13040 N 0.715
Sb04g020150 Sorghum bicolor Sb04g020150 N 0.788
TRIUR3_27883 Triticum urartu TRIUR3_27883 N 0.715
Traes_6DS_43372C0A6 Triticum aestivum Traes_6DS_43372C0A6 N 0.788
Traes_6AL_13895C140 Triticum aestivum Traes_6AL_13895C140 N 0.788
TCM_002835 Theobroma cacao TCM_002835 N 0.759
Solyc09g059510.2 Solanum lycopersicum Solyc09g059510.2 N 0.773
Si018306m.g Setaria italica Si018306m.g N 0.788
SELMODRAFT_443366 Selaginella moellendorffii SELMODRAFT_443366 N 0.729
SELMODRAFT_420254 Selaginella moellendorffii SELMODRAFT_420254 N 0.729
AMTR_s00013p00252260 Amborella trichopoda AMTR_s00013p00252260 N 0.759
PRUPE_ppa011812mg Prunus persica PRUPE_ppa011812mg N 0.759
POPTR_0002s24750 Populus trichocarpa POPTR_0002s24750 N 0.759
PGSC0003DMG400017485 Solanum tuberosum PGSC0003DMG400017485 N 0.773
OS02G0499000 Oryza sativa OS02G0499000 N 0.780
ORUFI02G18290 Oryza rufipogon ORUFI02G18290 N 0.780
ORGLA02G0152600 Oryza glaberrima ORGLA02G0152600 N 0.780
OPUNC02G15530 Oryza punctata OPUNC02G15530 N 0.780
ONIVA02G18870 Oryza nivara ONIVA02G18870 N 0.780