PK10791.1 (Cannabis sativa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 PK10791.1 T024335_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.725 0.725
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.725 0.725
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK10791.1 B3 13 106
PK10791.1 B3 306 400

Links

Other B3 family TFs
Other Cannabis sativa TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VRN1 Arabidopsis thaliana AT3G18990 D 0.725
orange1.1g016655m.g Citrus sinensis orange1.1g016655m.g I 0.730
Ciclev10028642m.g Citrus clementina Ciclev10028642m.g I 0.730
evm.TU.supercontig_62.76 Carica papaya evm.TU.supercontig_62.76 I 0.000
gene31955-v1.0-hybrid Fragaria vesca gene31955-v1.0-hybrid I 0.783
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I 0.735
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.772
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.762
Gorai.013G040000 Gossypium raimondii Gorai.013G040000 I 0.746
Carubv10015637m.g Capsella rubella Carubv10015637m.g I 0.725
SapurV1A.0090s0340 Salix purpurea SapurV1A.0090s0340 I 0.730
SapurV1A.0979s0040 Salix purpurea SapurV1A.0979s0040 I 0.725
SapurV1A.2089s0010 Salix purpurea SapurV1A.2089s0010 I 0.730
Thhalv10021075m.g Eutrema salsugineum Thhalv10021075m.g I 0.720
chr2.CM0262.200.nc Lotus japonicus chr2.CM0262.200.nc I 0.751
chr2.CM0308.470.nd Lotus japonicus chr2.CM0308.470.nd I 0.746
Cagra.5105s0003 Capsella grandiflora Cagra.5105s0003 I 0.725
Bostr.19424s0762 Boechera stricta Bostr.19424s0762 I 0.725
cassava29880.valid.m1 Manihot esculenta cassava29880.valid.m1 I 0.735
29851.m002498 Ricinus communis 29851.m002498 I 0.746
TCM_006971 Theobroma cacao TCM_006971 I 0.798
PRUPE_ppa006275mg Prunus persica PRUPE_ppa006275mg I 0.836
POPTR_0009s11170 Populus trichocarpa POPTR_0009s11170 I 0.735
POPTR_0004s15400 Populus trichocarpa POPTR_0004s15400 I 0.735
VRN1 Arabidopsis lyrata fgenesh2_kg.3__2116__AT3G18990.1 I 0.725
Bra037544 Brassica rapa Bra037544 I 0.720
Bra022376 Brassica rapa Bra022376 I 0.000
Bra001729 Brassica rapa Bra001729 I 0.000
Bo5g116790 Brassica oleracea Bo5g116790 I 0.720
Bo3g071890 Brassica oleracea Bo3g071890 I 0.000
Bo1g115980 Brassica oleracea Bo1g115980 I 0.725