Pavir.J19980 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.J19980 T028595_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J19980.1.p BED ZF 59 114

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_Genewise1.C_120062 Heterobasidion annosum estExt_Genewise1.C_120062 N 0.000
SCHCODRAFT_110960 Schizophyllum commune SCHCODRAFT_110960 N 0.000
sr12520 Sporisorium reilianum sr12520 N 0.000
Thaps24755 Thalassiosira pseudonana Thaps24755 N 0.000
Thaps25909 Thalassiosira pseudonana Thaps25909 N 0.000
Thapsdraft1840 Thalassiosira pseudonana Thapsdraft1840 N 0.000
TSTA_110260 Talaromyces stipitatus TSTA_110260 N 0.000
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.000
UM01457 Ustilago maydis UM01457 N 0.000
NCLIV_023590 Neospora caninum NCLIV_023590 N 0.000
fgenesh1_pg.C_scaffold_11000089 Sporobolomyces roseus fgenesh1_pg.C_scaffold_11000089 N 0.000
estExt_fgeneshTM_pg.C_10542 Tremella mesenterica estExt_fgeneshTM_pg.C_10542 N 0.000
RHTO_04537 Rhodosporidium toruloides RHTO_04537 N 0.000
Kwal_9519 Kluyveromyces waltii Kwal_9519 N 0.000
SAKL0C03872g Lachancea kluyveri SAKL0C03872g N 0.000
SAKL0C03916g Lachancea kluyveri SAKL0C03916g N 0.000
SAKL0C10648g Lachancea kluyveri SAKL0C10648g N 0.000
SAKL0D09922g Lachancea kluyveri SAKL0D09922g N 0.000
SAKL0H00726g Lachancea kluyveri SAKL0H00726g N 0.000
XP_002490100.1 Pichia pastoris XP_002490100.1 N 0.000
XP_002492281.1 Pichia pastoris XP_002492281.1 N 0.000
GPLIN_000170600 Globodera pallida GPLIN_000170600 N 0.000
MCOS_0000664501 Mesocestoides corti MCOS_0000664501 N 0.000
KUCA_T00004799001 Kuraishia capsulata KUCA_T00004799001 N 0.000
AWRI1499_2837 Brettanomyces bruxellensis AWRI1499_2837 N 0.000
BGIBMGA006156 Bombyx mori BGIBMGA006156 N 0.000
BN7_5943 Wickerhamomyces ciferrii BN7_5943 N 0.000
CC1G_07855 Coprinopsis cinerea CC1G_07855 N 0.000
CMQ_7998 Grosmannia clavigera CMQ_7998 N 0.000
GLOINDRAFT_9339 Rhizophagus irregularis GLOINDRAFT_9339 N 0.000
HelroG178674 Helobdella robusta HelroG178674 N 0.000
HETIRDRAFT_460226 Heterobasidion irregulare HETIRDRAFT_460226 N 0.000
HPODL_02662 Ogataea parapolymorpha HPODL_02662 N 0.000
JAAARDRAFT_460099 Jaapia argillacea JAAARDRAFT_460099 N 0.000
K437DRAFT_66818 Tilletiaria anomala K437DRAFT_66818 N 0.000
A1Q1_02593 Trichosporon asahii A1Q1_02593 N 0.000
LALA0_S01e08702g Lachancea lanzarotensis LALA0_S01e08702g N 0.000
LALA0_S10e00254g Lachancea lanzarotensis LALA0_S10e00254g N 0.000
M378DRAFT_41557 Amanita muscaria M378DRAFT_41557 N 0.000
M407DRAFT_45069 Tulasnella calospora M407DRAFT_45069 N 0.000
Moror_8439 Moniliophthora roreri Moror_8439 N 0.000
MPER_12197 Moniliophthora perniciosa MPER_12197 N 0.000
MVLG_01553 Microbotryum violaceum MVLG_01553 N 0.000
MYCTH_2294733 Myceliophthora thermophila MYCTH_2294733 N 0.000
PAS_chr1-1_0442 Komagataella pastoris PAS_chr1-1_0442 N 0.000
PAS_chr3_1149 Komagataella pastoris PAS_chr3_1149 N 0.000