Bo4g126940 (Brassica oleracea)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bo4g126940 T031169_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH104
M01706_2.00 		Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC		 PBM
Weirauch et al.(2014)
pTH7365 		0.891 0.940
BHLH104
M06737_2.00 		Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC		 Dap-seq
OMalley et al.(2016)
bHLH104_col_b 		0.891 0.940
BHLH34
M01704_2.00 		Arabidopsis thaliana
VCACGYGH
DCRCGTGB		 PBM
Weirauch et al.(2014)
pTH7212 		0.856 0.940
BHLH34
M06734_2.00 		Arabidopsis thaliana
NNNHNNDNNNNVCACGTGHCN
NGDCACGTGBNNNNHNNDNNN		 Dap-seq
OMalley et al.(2016)
bHLH34_colamp_a 		0.856 0.940
BHLH34
M06735_2.00 		Arabidopsis thaliana
RWRNNNNNCACGTGBNNNNNNNN
NNNNNNNNVCACGTGNNNNNYWY		 Dap-seq
OMalley et al.(2016)
bHLH34_col 		0.856 0.940
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g126940.1 bHLH 135 184

Links

Other bHLH family TFs
Other Brassica oleracea TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH34 Arabidopsis thaliana AT3G23210 D 0.856
SELMODRAFT_431241 Selaginella moellendorffii SELMODRAFT_431241 I
mgf009119m Mimulus guttatus mgf009119m I
mgf012088m Mimulus guttatus mgf012088m I
VIT_14s0081g00720 Vitis vinifera VIT_14s0081g00720 I
Solyc10g006510.2 Solanum lycopersicum Solyc10g006510.2 I
Solyc07g064040.2 Solanum lycopersicum Solyc07g064040.2 I
Gorai.002G081900 Gossypium raimondii Gorai.002G081900 I
Gorai.011G172500 Gossypium raimondii Gorai.011G172500 I
SELMODRAFT_405883 Selaginella moellendorffii SELMODRAFT_405883 I
Gorai.013G164100 Gossypium raimondii Gorai.013G164100 I
PGSC0003DMG400019263 Solanum tuberosum PGSC0003DMG400019263 I
PGSC0003DMG400014432 Solanum tuberosum PGSC0003DMG400014432 I
AMTR_s00009p00175450 Amborella trichopoda AMTR_s00009p00175450 I
bHLH34 Arabidopsis lyrata fgenesh2_kg.3__2536__AT3G23210.1 I 0.856
SapurV1A.0502s0080 Salix purpurea SapurV1A.0502s0080 N
Pavir.Ba00731 Panicum virgatum Pavir.Ba00731 N
Pavir.J35704 Panicum virgatum Pavir.J35704 N
SapurV1A.0028s0330 Salix purpurea SapurV1A.0028s0330 N
Eucgr.K00871 Eucalyptus grandis Eucgr.K00871 N
Aquca_017_00706 Aquilegia coerulea Aquca_017_00706 N
Cucsa.086330 Cucumis sativus Cucsa.086330 N
Cucsa.086320 Cucumis sativus Cucsa.086320 N
Cucsa.086310 Cucumis sativus Cucsa.086310 N
Cucsa.086300 Cucumis sativus Cucsa.086300 N
29842.m003681 Ricinus communis 29842.m003681 N
Cla019717 Citrullus lanatus Cla019717 N
VIT_19s0014g05100 Vitis vinifera VIT_19s0014g05100 N
Solyc02g079970.2 Solanum lycopersicum Solyc02g079970.2 N
Si030877m.g Setaria italica Si030877m.g N
Sb02g035580 Sorghum bicolor Sb02g035580 N
POPTR_0011s03360 Populus trichocarpa POPTR_0011s03360 N
POPTR_0004s03190 Populus trichocarpa POPTR_0004s03190 N
PGSC0003DMG400021717 Solanum tuberosum PGSC0003DMG400021717 N
OB07G23510 Oryza brachyantha OB07G23510 N