Gfo_R007094 (Geospiza fortis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gfo_R007094 T047330_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlha15
M01749_2.00 		Mus musculus
RCATATGS
SCATATGY		 PBM
Weirauch et al.(2014)
pTH4582 		0.914 0.962
BHLHA15
M02803_2.00 		Homo sapiens
AMCATATGKH
DMCATATGKT		 SELEX
Jolma et al.(2013)
BHLHA15_1 		0.914 0.962
BHLHA15
M04195_2.00 		Homo sapiens
VVCAGCTGBN
NVCAGCTGBB		 SELEX
Yin et al.(2017)
BHLHA15_eDBD_HT-SELEX_1 		0.914 0.962
BHLHA15
M04196_2.00 		Homo sapiens
NVCATATGBN
NVCATATGBN		 SELEX
Yin et al.(2017)
BHLHA15_eDBD_HT-SELEX_2 		0.914 0.962
BHLHA15
M08739_2.00 		Homo sapiens
VVRRCAGCTGK
MCAGCTGYYBB		 Misc
Kulakovskiy et al.(2013)
BHA15_HUMAN.H11MO.0.B 		0.914 0.962
Bhlha15
M08774_2.00 		Mus musculus
VVRRCAGCTGK
MCAGCTGYYBB		 Misc
Kulakovskiy et al.(2013)
BHA15_MOUSE.H11MO.0.A 		0.914 0.962
BHLHA15
M04197_2.00 		Homo sapiens
VVCAGCTGKB
VMCAGCTGBB		 SELEX
Yin et al.(2017)
BHLHA15_eDBD_Methyl-HT-SELEX_1 		0.914 0.962
BHLHA15
M04198_2.00 		Homo sapiens
DVCATATGBH
DVCATATGBH		 SELEX
Yin et al.(2017)
BHLHA15_eDBD_Methyl-HT-SELEX_2 		0.914 0.962
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R007094 bHLH 67 119

Links

Other bHLH family TFs
Other Geospiza fortis TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_17s0000g05400 Vitis vinifera VIT_17s0000g05400 I
ORGLA05G0216200 Oryza glaberrima ORGLA05G0216200 I
ORUFI03G14500 Oryza rufipogon ORUFI03G14500 I
ORUFI05G26880 Oryza rufipogon ORUFI05G26880 I
OS05G0553400 Oryza sativa OS05G0553400 I
PGSC0003DMG400008532 Solanum tuberosum PGSC0003DMG400008532 I
Sb01g038250 Sorghum bicolor Sb01g038250 I
Sb09g027800 Sorghum bicolor Sb09g027800 I
Si022874m.g Setaria italica Si022874m.g I
Solyc03g059200.1 Solanum lycopersicum Solyc03g059200.1 I
Traes_4AS_4EFBA88E4 Triticum aestivum Traes_4AS_4EFBA88E4 I
Traes_4BL_532725AD5 Triticum aestivum Traes_4BL_532725AD5 I
Traes_4DL_DFCF4A15A Triticum aestivum Traes_4DL_DFCF4A15A I
Traes_7AL_5B57EF9FC Triticum aestivum Traes_7AL_5B57EF9FC I
Traes_7DL_20EC9096A Triticum aestivum Traes_7DL_20EC9096A I
VIT_04s0008g00620 Vitis vinifera VIT_04s0008g00620 I
AMTR_s00133p00071910 Amborella trichopoda AMTR_s00133p00071910 I
mgf012871m Mimulus guttatus mgf012871m I
Bostr.10199s0146 Boechera stricta Bostr.10199s0146 I
Cagra.3954s0035 Capsella grandiflora Cagra.3954s0035 I
Carubv10002949m.g Capsella rubella Carubv10002949m.g I
Ciclev10013340m.g Citrus clementina Ciclev10013340m.g I
Eucgr.I02017 Eucalyptus grandis Eucgr.I02017 I
evm.TU.contig_28309.2 Carica papaya evm.TU.contig_28309.2 I
gene02643-v1.0-hybrid Fragaria vesca gene02643-v1.0-hybrid I
orange1.1g043557m.g Citrus sinensis orange1.1g043557m.g I
Pavir.Db01456 Panicum virgatum Pavir.Db01456 I
Pavir.J11789 Panicum virgatum Pavir.J11789 I
Pavir.J15551 Panicum virgatum Pavir.J15551 I
SapurV1A.1048s0030 Salix purpurea SapurV1A.1048s0030 I
Thhalv10014063m.g Eutrema salsugineum Thhalv10014063m.g I
PDK_20s1379331g001 Phoenix dactylifera PDK_20s1379331g001 I
GSMUA_Achr3G10060_001 Musa acuminata GSMUA_Achr3G10060_001 I
F775_14388 Aegilops tauschii F775_14388 I
GLYMA13G04920 Glycine max GLYMA13G04920 I
GLYMA19G02090 Glycine max GLYMA19G02090 I
Bra020228 Brassica rapa Bra020228 I
Bra002448 Brassica rapa Bra002448 I
GRMZM2G069325 Zea mays GRMZM2G069325 I
Bo2g024590 Brassica oleracea Bo2g024590 I
GRMZM2G308034 Zea mays GRMZM2G308034 I
GSMUA_Achr4G25260_001 Musa acuminata GSMUA_Achr4G25260_001 I
LPERR03G12200 Leersia perrieri LPERR03G12200 I
LPERR05G20870 Leersia perrieri LPERR05G20870 I
MLOC_44167 Hordeum vulgare MLOC_44167 I
BGIOSGA017601 Oryza indica BGIOSGA017601 I
OPUNC03G13320 Oryza punctata OPUNC03G13320 I
ONIVA03G15100 Oryza nivara ONIVA03G15100 I
OB03G23760 Oryza brachyantha OB03G23760 I
OBART03G13840 Oryza barthii OBART03G13840 I
RAX1 Arabidopsis thaliana AT5G23000 I
OMERI03G12640 Oryza meridionalis OMERI03G12640 I
RAX1 Arabidopsis lyrata Al_scaffold_0006_2171 I
OGLUM03G13980 Oryza glumaepatula OGLUM03G13980 I
BGIOSGA010923 Oryza indica BGIOSGA010923 I
ORGLA03G0133600 Oryza glaberrima ORGLA03G0133600 I
Lus10036660.g Linum usitatissimum Lus10036660.g N
Carubv10017650m.g Capsella rubella Carubv10017650m.g N
BRADI2G17280 Brachypodium distachyon BRADI2G17280 N
Ciclev10023930m.g Citrus clementina Ciclev10023930m.g N
Bra025337 Brassica rapa Bra025337 N
gene01311-v1.0-hybrid Fragaria vesca gene01311-v1.0-hybrid N
Gorai.010G139300 Gossypium raimondii Gorai.010G139300 N
Lus10033119.g Linum usitatissimum Lus10033119.g N
Lus10039462.g Linum usitatissimum Lus10039462.g N
MDP0000258046 Malus domestica MDP0000258046 N
Bo7g091360 Brassica oleracea Bo7g091360 N
MYB35 Arabidopsis thaliana AT3G28470 N
Thhalv10005502m.g Eutrema salsugineum Thhalv10005502m.g N
PDK_20s1406481g002 Phoenix dactylifera PDK_20s1406481g002 N
SapurV1A.0161s0110 Salix purpurea SapurV1A.0161s0110 N
SapurV1A.0138s0120 Salix purpurea SapurV1A.0138s0120 N
Pm015813 Prunus mume Pm015813 N
POPTR_0012s07450 Populus trichocarpa POPTR_0012s07450 N
POPTR_0015s07900 Populus trichocarpa POPTR_0015s07900 N
ATMYB35 Populus trichocarpa POPTR_0017s11140 N
PRUPE_ppa015976mg Prunus persica PRUPE_ppa015976mg N
PRUPE_ppa017571mg Prunus persica PRUPE_ppa017571mg N
MTR_6g009430 Medicago truncatula MTR_6g009430 N
MTR_3g045430 Medicago truncatula MTR_3g045430 N
TCM_018082 Theobroma cacao TCM_018082 N
TCM_045715 Theobroma cacao TCM_045715 N
ATMYB35 Vitis vinifera VIT_14s0066g02180 N
Ca_10555 Cicer arietinum Ca_10555 N
Cla019436 Citrullus lanatus Cla019436 N
ATMYB35 Arabidopsis lyrata fgenesh2_kg.5__614__AT3G28470.1 N
Pm024633 Prunus mume Pm024633 N
cassava26191.m1 Manihot esculenta cassava26191.m1 N
cassava27944.m1 Manihot esculenta cassava27944.m1 N
cassava41279.m1 Manihot esculenta cassava41279.m1 N
Cucsa.197410 Cucumis sativus Cucsa.197410 N
Cucsa.339230 Cucumis sativus Cucsa.339230 N
estExt_Genewise1.C_360117 Physcomitrella patens estExt_Genewise1.C_360117 N
gw1.65.181.1 Physcomitrella patens gw1.65.181.1 N
Aquca_025_00152 Aquilegia coerulea Aquca_025_00152 N
Bostr.0556s0504 Boechera stricta Bostr.0556s0504 N
Cagra.2310s0015 Capsella grandiflora Cagra.2310s0015 N