Cucsa.169240 (Cucumis sativus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cucsa.169240 T048187_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18401.1
M01126_2.00 		Cannabis sativa
NNNVCACGTGBN
NVCACGTGBNNN		 PBM
Lambert et al.(2019)
pTH11272 		0.887 0.843
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.169240.1 bHLH 53 103

Links

Other bHLH family TFs
Other Cucumis sativus TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK18401.1 Cannabis sativa PK18401.1 D 0.887
Cla014511 Citrullus lanatus Cla014511 I 0.887
Cla001685 Citrullus lanatus Cla001685 I 0.888
Pm021043 Prunus mume Pm021043 I 0.890
Pm026758 Prunus mume Pm026758 I 0.887
29711.m000322 Ricinus communis 29711.m000322 I 0.887
29830.m001386 Ricinus communis 29830.m001386 I 0.890
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I 0.887
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I 0.887
Cucsa.043580 Cucumis sativus Cucsa.043580 I 0.887
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I 0.855
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I 0.855
mgf017107m Mimulus guttatus mgf017107m I 0.864
Bostr.19424s0675 Boechera stricta Bostr.19424s0675 I 0.840
Cagra.0316s0082 Capsella grandiflora Cagra.0316s0082 I 0.840
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I 0.876
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I 0.876
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I 0.887
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I 0.855
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I 0.863
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I 0.852
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I 0.887
Lus10028456.g Linum usitatissimum Lus10028456.g I 0.890
Lus10041908.g Linum usitatissimum Lus10041908.g I 0.890
MDP0000275844 Malus domestica MDP0000275844 I 0.890
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I 0.876
Pavir.Aa02015 Panicum virgatum Pavir.Aa02015 I 0.842
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I 0.874
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I 0.863
Thhalv10021271m.g Eutrema salsugineum Thhalv10021271m.g I 0.840
Thhalv10023630m.g Eutrema salsugineum Thhalv10023630m.g I 0.840
OPUNC02G13570 Oryza punctata OPUNC02G13570 I 0.877
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I 0.879
BHLH121 Arabidopsis thaliana AT3G19860 I 0.840
BGIOSGA008112 Oryza indica BGIOSGA008112 I 0.877
Bo1g112310 Brassica oleracea Bo1g112310 I 0.840
Bra038236 Brassica rapa Bra038236 I 0.840
bHLH121 Arabidopsis lyrata fgenesh2_kg.3__2204__AT3G19860.1 I 0.840
GLYMA07G26910 Glycine max GLYMA07G26910 I 0.854
GLYMA08G15740 Glycine max GLYMA08G15740 I 0.890
GLYMA12G02740 Glycine max GLYMA12G02740 I 0.869
GLYMA15G29630 Glycine max GLYMA15G29630 I 0.865
GRMZM2G114444 Zea mays GRMZM2G114444 I 0.842
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I 0.890
LPERR02G12290 Leersia perrieri LPERR02G12290 I 0.842
MTR_4g075480 Medicago truncatula MTR_4g075480 I 0.855
OB0197G10010 Oryza brachyantha OB0197G10010 I 0.842
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I 0.890
OS02G0433600 Oryza sativa OS02G0433600 I 0.877
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I 0.852
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I 0.887
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I 0.855
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I 0.852
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I 0.890
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I 0.887
Sb03g028030 Sorghum bicolor Sb03g028030 I 0.842
Si017804m.g Setaria italica Si017804m.g I 0.842
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I 0.852
TCM_000204 Theobroma cacao TCM_000204 I 0.890
TCM_006692 Theobroma cacao TCM_006692 I 0.876
bHLH121 Vitis vinifera VIT_03s0038g01790 I 0.890
bHLH11 Vitis vinifera VIT_04s0023g03430 I 0.887