Pavir.Ab01730 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ab01730 T050659_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18401.1
M01126_2.00 		Cannabis sativa
NNNVCACGTGBN
NVCACGTGBNNN		 PBM
Lambert et al.(2019)
pTH11272 		0.839 0.765
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab01730.1.p bHLH 36 86

Links

Other bHLH family TFs
Other Panicum virgatum TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK18401.1 Cannabis sativa PK18401.1 D 0.839
Cla014511 Citrullus lanatus Cla014511 I 0.839
bHLH11 Vitis vinifera VIT_04s0023g03430 I 0.839
Pm021043 Prunus mume Pm021043 I 0.842
Pm026758 Prunus mume Pm026758 I 0.839
29711.m000322 Ricinus communis 29711.m000322 I 0.839
29830.m001386 Ricinus communis 29830.m001386 I 0.842
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I 0.839
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I 0.839
Cucsa.043580 Cucumis sativus Cucsa.043580 I 0.839
Bostr.19424s0675 Boechera stricta Bostr.19424s0675 I 0.839
Cagra.0316s0082 Capsella grandiflora Cagra.0316s0082 I 0.839
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I 0.839
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I 0.842
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I 0.839
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I 0.874
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I 0.839
Lus10028456.g Linum usitatissimum Lus10028456.g I 0.842
Lus10041908.g Linum usitatissimum Lus10041908.g I 0.842
MDP0000275844 Malus domestica MDP0000275844 I 0.842
Pavir.Aa02015 Panicum virgatum Pavir.Aa02015 I 0.890
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I 0.852
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I 0.841
Thhalv10021271m.g Eutrema salsugineum Thhalv10021271m.g I 0.839
Thhalv10023630m.g Eutrema salsugineum Thhalv10023630m.g I 0.839
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I 0.842
BHLH121 Arabidopsis thaliana AT3G19860 I 0.839
BGIOSGA008112 Oryza indica BGIOSGA008112 I 0.855
Bo1g112310 Brassica oleracea Bo1g112310 I 0.839
Bra038236 Brassica rapa Bra038236 I 0.839
BRADI3G11520 Brachypodium distachyon BRADI3G11520 I 0.890
bHLH121 Arabidopsis lyrata fgenesh2_kg.3__2204__AT3G19860.1 I 0.839
GLYMA08G15740 Glycine max GLYMA08G15740 I 0.842
GLYMA15G29630 Glycine max GLYMA15G29630 I 0.841
GRMZM2G114444 Zea mays GRMZM2G114444 I 0.890
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I 0.842
LPERR02G12290 Leersia perrieri LPERR02G12290 I 0.890
OB0197G10010 Oryza brachyantha OB0197G10010 I 0.890
OPUNC02G13570 Oryza punctata OPUNC02G13570 I 0.855
OS02G0433600 Oryza sativa OS02G0433600 I 0.855
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I 0.839
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I 0.842
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I 0.842
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I 0.839
Sb03g028030 Sorghum bicolor Sb03g028030 I 0.890
Si017804m.g Setaria italica Si017804m.g I 0.890
TCM_000204 Theobroma cacao TCM_000204 I 0.842
bHLH121 Vitis vinifera VIT_03s0038g01790 I 0.842
Bra017745 Brassica rapa Bra017745 N 0.838
Bo7g117760 Brassica oleracea Bo7g117760 N 0.838
Thhalv10026039m.g Eutrema salsugineum Thhalv10026039m.g N 0.838