Bo6g106560 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo6g106560 T081761_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.794 0.953
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.794 0.953
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g106560.1 C2H2 ZF 146 167
Bo6g106560.1 C2H2 ZF 167 193

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.K00939 Eucalyptus grandis Eucgr.K00939 N 0.000
OS01G0780800 Oryza sativa OS01G0780800 N 0.000
Sb03g036430 Sorghum bicolor Sb03g036430 N 0.000
Si002762m.g Setaria italica Si002762m.g N 0.000
VIT_12s0059g01980 Vitis vinifera VIT_12s0059g01980 N 0.000
Cla007849 Citrullus lanatus Cla007849 N 0.000
29983.m003255 Ricinus communis 29983.m003255 N 0.000
Cucsa.147930 Cucumis sativus Cucsa.147930 N 0.000
Aquca_008_00040 Aquilegia coerulea Aquca_008_00040 N 0.000
ORUFI01G36290 Oryza rufipogon ORUFI01G36290 N 0.000
Gorai.005G204800 Gossypium raimondii Gorai.005G204800 N 0.000
Lus10018560.g Linum usitatissimum Lus10018560.g N 0.000
Lus10039791.g Linum usitatissimum Lus10039791.g N 0.000
MDP0000089136 Malus domestica MDP0000089136 N 0.000
Pavir.Eb03405 Panicum virgatum Pavir.Eb03405 N 0.000
SapurV1A.0492s0170 Salix purpurea SapurV1A.0492s0170 N 0.000
PK16281.1 Cannabis sativa PK16281.1 N 0.000
BGIOSGA000702 Oryza indica BGIOSGA000702 N 0.000
ORGLA01G0271200 Oryza glaberrima ORGLA01G0271200 N 0.000
OPUNC01G32160 Oryza punctata OPUNC01G32160 N 0.000
ONIVA01G37460 Oryza nivara ONIVA01G37460 N 0.000
OMERI01G30050 Oryza meridionalis OMERI01G30050 N 0.000
OLONG_014986 Oryza longistaminata OLONG_014986 N 0.000
OGLUM01G37340 Oryza glumaepatula OGLUM01G37340 N 0.000
OBART01G33150 Oryza barthii OBART01G33150 N 0.000
OB01G42000 Oryza brachyantha OB01G42000 N 0.000
LPERR01G28620 Leersia perrieri LPERR01G28620 N 0.000
GSMUA_AchrUn_randomG13850_001 Musa acuminata GSMUA_AchrUn_randomG13850_001 N 0.000
GSMUA_Achr2G02900_001 Musa acuminata GSMUA_Achr2G02900_001 N 0.000
GSMUA_Achr1G08820_001 Musa acuminata GSMUA_Achr1G08820_001 N 0.000
GRMZM2G082745 Zea mays GRMZM2G082745 N 0.000
GRMZM2G004690 Zea mays GRMZM2G004690 N 0.000
BRADI2G51790 Brachypodium distachyon BRADI2G51790 N 0.000