Bcl6 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000001843 T108870_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL6
M00228_2.00 		Homo sapiens
NNVNDVRANN
NNTYBHNBNN		 PBM
Barrera et al.(2016)
BCL6_REF 		0.827 1.000
BCL6
M04424_2.00 		Homo sapiens
NYGCTTTCKAGGAAHN
NDTTCCTMGAAAGCRN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1 		0.827 1.000
BCL6
M04425_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2 		0.827 1.000
Bcl6
M08097_2.00 		Mus musculus
NDCYYTCYAGGAAN
NTTCCTRGARRGHN		 ChIP-seq
Mathelier et al.(2014)
MA0463.1 		0.827 1.000
Bcl6
M08024_2.00 		Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH
DRRDRRVNRRRRRRNRDGADSWVWDDVNRD		 ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim 		0.827 1.000
BCL6
M08877_2.00 		Homo sapiens
NNMYYTCYAGGAA
TTCCTRGARRKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A 		0.827 1.000
Bcl6
M08972_2.00 		Mus musculus
NNMTYTCYAGGAA
TTCCTRGARAKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A 		0.827 1.000
Bcl6
M09513_2.00 		Mus musculus
NNNNYTTCYWGGAAN
NTTCCWRGAARNNNN		 Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578 		0.827 1.000
BCL6
M10180_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_01 		0.827 1.000
BCL6
M10181_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_02 		0.827 1.000
BCL6
M10182_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3_01 		0.827 1.000
BCL6
M10183_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3 		0.827 1.000
BCL6
M10184_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q6 		0.827 1.000
BCL6
M04426_2.00 		Homo sapiens
NTGCTTTCTAGGAAHN
NDTTCCTAGAAAGCAN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1 		0.827 1.000
BCL6
M04427_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2 		0.827 1.000
BCL6
M00227_2.00 		Homo sapiens
NTAATTRWNN
NNWYAATTAN		 PBM
Barrera et al.(2016)
BCL6_H676Y 		0.821 0.964
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000002522 C2H2 ZF 519 542
ENSRNOP00000002522 C2H2 ZF 547 569
ENSRNOP00000002522 C2H2 ZF 575 597
ENSRNOP00000002522 C2H2 ZF 603 625
ENSRNOP00000002522 C2H2 ZF 631 653
ENSRNOP00000002522 C2H2 ZF 659 682

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2A Arabidopsis thaliana AT5G05410 D
PK07402.1 Cannabis sativa PK07402.1 D
TCM_021596 Theobroma cacao TCM_021596 I
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I
29729.m002292 Ricinus communis 29729.m002292 I
29820.m001008 Ricinus communis 29820.m001008 I
cassava46663.m1 Manihot esculenta cassava46663.m1 I
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I
Carubv10001099m.g Capsella rubella Carubv10001099m.g I
Carubv10013771m.g Capsella rubella Carubv10013771m.g I
Carubv10023556m.g Capsella rubella Carubv10023556m.g I
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I
DREB2B Arabidopsis thaliana AT3G11020 I
Bra034159 Brassica rapa Bra034159 I
Bo1g141310 Brassica oleracea Bo1g141310 I
Bo2g006960 Brassica oleracea Bo2g006960 I
Bo3g063910 Brassica oleracea Bo3g063910 I
Bo5g136930 Brassica oleracea Bo5g136930 I
Bo9g177130 Brassica oleracea Bo9g177130 I
Bra001386 Brassica rapa Bra001386 I
Bra005852 Brassica rapa Bra005852 I
Bra028759 Brassica rapa Bra028759 I
Bra029889 Brassica rapa Bra029889 I
Solyc06g050520.1 Solanum lycopersicum Solyc06g050520.1 I
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I
GLYMA07G19221 Glycine max GLYMA07G19221 I
GLYMA18G43750 Glycine max GLYMA18G43750 I
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I
MTR_5g083340 Medicago truncatula MTR_5g083340 I
MTR_7g070220 Medicago truncatula MTR_7g070220 I
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I