Gfo_R004393 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R004393 T135707_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zfp740
M00784_2.00 		Mus musculus
MCCCCCCNHN
NDNGGGGGGK		 PBM
Weirauch et al.(2013)
pTH2857 		0.820 0.926
Zfp740
M00143_2.00 		Mus musculus
HMCCCCCNNN
NNNGGGGGKD		 PBM
Badis et al.(2009)
Zfp740_0925 		0.820 0.926
Zfp740
M02935_2.00 		Mus musculus
NCCCCCCCAH
DTGGGGGGGN		 SELEX
Jolma et al.(2013)
Zfp740_1 		0.820 0.926
ZNF740
M02891_2.00 		Homo sapiens
VCCCCCCCMY
RKGGGGGGGB		 SELEX
Jolma et al.(2013)
ZNF740_1 		0.804 0.926
ZNF740
M02892_2.00 		Homo sapiens
VCCCCCCCAY
RTGGGGGGGB		 SELEX
Jolma et al.(2013)
ZNF740_2 		0.804 0.926
ZNF740
M04467_2.00 		Homo sapiens
NYVCCCCCCCCAC
GTGGGGGGGGBRN		 SELEX
Yin et al.(2017)
ZNF740_eDBD_HT-SELEX 		0.804 0.926
ZNF740
M04469_2.00 		Homo sapiens
NYNCCCCCCCCAC
GTGGGGGGGGNRN		 SELEX
Yin et al.(2017)
ZNF740_FL_HT-SELEX 		0.804 0.926
ZNF740
M10221_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF740_02 		0.804 0.926
ZNF740
M04468_2.00 		Homo sapiens
YYDCCCCCCCCAY
RTGGGGGGGGHRR		 SELEX
Yin et al.(2017)
ZNF740_eDBD_Methyl-HT-SELEX 		0.804 0.926
ZNF740
M04470_2.00 		Homo sapiens
NYVCCCCCCCCAC
GTGGGGGGGGBRN		 SELEX
Yin et al.(2017)
ZNF740_FL_Methyl-HT-SELEX 		0.804 0.926
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004393 C2H2 ZF 16 38
Gfo_R004393 C2H2 ZF 44 66
Gfo_R004393 C2H2 ZF 72 93

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Prdm1 Mus musculus ENSMUSG00000038151 D
PRDM1 Homo sapiens ENSG00000057657 D
PRDM1 Sus scrofa ENSSSCG00000004369 I
PRDM1 Ochotona princeps ENSOPRG00000006055 I
ENSPANG00000016727 Papio anubis ENSPANG00000016727 I
ENSPPYG00000016879 Pongo abelii ENSPPYG00000016879 I
ENSPSIG00000002661 Pelodiscus sinensis ENSPSIG00000002661 I
PRDM1 Pan troglodytes ENSPTRG00000018457 I
PRDM1 Pteropus vampyrus ENSPVAG00000011732 I
Prdm1 Rattus norvegicus ENSRNOG00000000323 I
PRDM1 Sorex araneus ENSSARG00000004079 I
ENSSHAG00000010080 Sarcophilus harrisii ENSSHAG00000010080 I
PRDM1 Oryctolagus cuniculus ENSOCUG00000015495 I
ENSSTOG00000016505 Ictidomys tridecemlineatus ENSSTOG00000016505 I
PRDM1 Tupaia belangeri ENSTBEG00000004089 I
ENSTNIG00000012300 Tetraodon nigroviridis ENSTNIG00000012300 I
ENSTSYG00000011666 Tarsius syrichta ENSTSYG00000011666 I
PRDM1 Tursiops truncatus ENSTTRG00000012894 I
Alligator_sinensis_CCG010485.1 Alligator sinensis Alligator_sinensis_CCG010485.1 I
Cmyd_10006231 Chelonia mydas Cmyd_10006231 I
ENSP00000358092 Macaca fascicularis ENSP00000358092 I
Myotis_brandtii_PRDM1_10034696 Myotis brandtii Myotis_brandtii_PRDM1_10034696 I
PRDM1 Loxodonta africana ENSLAFG00000013436 I
ENSAMXG00000004952 Astyanax mexicanus ENSAMXG00000004952 I
PRDM1 Callithrix jacchus ENSCJAG00000006332 I
PRDM1 Cavia porcellus ENSCPOG00000014064 I
ENSCSAG00000014744 Chlorocebus sabaeus ENSCSAG00000014744 I
PRDM1 Equus caballus ENSECAG00000009044 I
PRDM1 Erinaceus europaeus ENSEEUG00000013222 I
PRDM1 Echinops telfairi ENSETEG00000019669 I
PRDM1 Felis catus ENSFCAG00000010755 I
PRDM1 Gorilla gorilla ENSGGOG00000001929 I
PRDM1 Otolemur garnettii ENSOGAG00000014036 I
ENSMEUG00000000043 Macropus eugenii ENSMEUG00000000043 I
PRDM1 Microcebus murinus ENSMICG00000010329 I
PRDM1 Myotis lucifugus ENSMLUG00000014085 I
PRDM1 Macaca mulatta ENSMMUG00000021401 I
PRDM1 Monodelphis domestica ENSMODG00000018029 I
ENSMPUG00000009522 Mustela putorius furo ENSMPUG00000009522 I
ENSNLEG00000013211 Nomascus leucogenys ENSNLEG00000013211 I
PRDM1 Ornithorhynchus anatinus ENSOANG00000004176 I
ENSAMEG00000001482 Ailuropoda melanoleuca ENSAMEG00000001482 I