cassava35732.valid.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava35732.valid.m1 T137869_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.822 0.913
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.935
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.696
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.870
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.870
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.870
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.826
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.826
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava35732.valid.m1 C2H2 ZF 95 117
cassava35732.valid.m1 C2H2 ZF 149 171

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARF16 Arabidopsis thaliana AT4G30080 D 0.000
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.000
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.000
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.000
29908.m005953 Ricinus communis 29908.m005953 I 0.000
Pm019126 Prunus mume Pm019126 I 0.000
Cla022413 Citrullus lanatus Cla022413 I 0.000
Ca_26121 Cicer arietinum Ca_26121 I 0.000
TCM_035002 Theobroma cacao TCM_035002 I 0.000
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.000
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.000
Si005991m.g Setaria italica Si005991m.g I 0.000
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.000
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.000
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.000
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.000
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.000
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.000
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.000
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.000
ARF22 Oryza sativa OS10G0479900 I 0.000
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.000
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.000
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.000
MDP0000256621 Malus domestica MDP0000256621 I 0.000
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.000
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.000
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.000
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.000
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.000
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.000
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.000
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.000
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.000
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.000
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.000
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.000
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.000
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.000
mgf000336m Mimulus guttatus mgf000336m I 0.000
Bra011162 Brassica rapa Bra011162 I 0.000
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.000
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.000
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.000
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.000
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.000
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.000
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.000
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.000
Bra011955 Brassica rapa Bra011955 I 0.000
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.000
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.000
Bo7g114200 Brassica oleracea Bo7g114200 I 0.000
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.000
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.000
Bo4g071620 Brassica oleracea Bo4g071620 I 0.000
Bo1g014600 Brassica oleracea Bo1g014600 I 0.000
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.000
ARF10 Arabidopsis thaliana AT2G28350 I 0.000
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.000
ARF18 Oryza sativa OS06G0685700 I 0.000
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.000
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.000
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.000
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.000
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.000
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.000
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.000
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.000
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.000
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.000
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.000
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.000
OBART10G13410 Oryza barthii OBART10G13410 I 0.000
OBART06G25230 Oryza barthii OBART06G25230 I 0.000
OB06G32920 Oryza brachyantha OB06G32920 I 0.000
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.000
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N 0.000
ARF17 Arabidopsis lyrata scaffold_202748.1 N 0.000
MDP0000232116 Malus domestica MDP0000232116 N 0.000
Lus10024754.g Linum usitatissimum Lus10024754.g N 0.000
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.000
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.000
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N 0.000
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.000
Cagra.24523s0002 Capsella grandiflora Cagra.24523s0002 N 0.000
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.000
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N 0.000
Solyc11g013480.1 Solanum lycopersicum Solyc11g013480.1 N 0.000
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.000
GLYMA13G02410 Glycine max GLYMA13G02410 N 0.000
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.000
Bra015651 Brassica rapa Bra015651 N 0.000
Bra003665 Brassica rapa Bra003665 N 0.000
Bo6g121520 Brassica oleracea Bo6g121520 N 0.000
Bo6g081980 Brassica oleracea Bo6g081980 N 0.000
ARF17 Arabidopsis thaliana AT1G77850 N 0.000