Gfo_R011576 (Geospiza fortis)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Gfo_R011576 T165316_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.946 0.946
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.946 0.946
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R011576 CSD 1 37

Links

Other CSD family TFs
Other Geospiza fortis TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LIN28B Homo sapiens ENSG00000187772 D 0.946
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.946
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 1.000
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.973
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.946
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.946
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.973
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.865
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.892
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.973
LIN28B Bos taurus ENSBTAG00000043973 I 0.946
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.946
LIN28B Canis familiaris ENSCAFG00000003598 I 0.946
LIN28A Canis familiaris ENSCAFG00000012488 I 0.973
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.946
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.946
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.973
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.811
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.892
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.946
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.973
LIN28A Danio rerio ENSDARG00000004328 I 0.946
lin28a Danio rerio ENSDARG00000016999 I 0.730
lin28b Danio rerio ENSDARG00000052511 I 0.865
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.973
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.946
LIN28A Equus caballus ENSECAG00000020267 I 0.973
LIN28B Equus caballus ENSECAG00000020994 I 0.946
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.946
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.973
LIN28B Echinops telfairi ENSETEG00000015340 I 0.919
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 1.000
LIN28B Felis catus ENSFCAG00000005058 I 0.946
LIN28A Felis catus ENSFCAG00000012810 I 0.973
LIN28A Homo sapiens ENSG00000131914 I 0.973
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.919
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.946
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 1.000
LIN28B Gallus gallus ENSGALG00000026761 I 0.919
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.946
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.973
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.865
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.892
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.946
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.946
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.973
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.946
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.919
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.892
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.973
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 1.000
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.919
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.946
LIN28B Myotis lucifugus ENSMLUG00000006883 I 0.946
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.973
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.946
ENSMMUG00000032211 Macaca mulatta ENSMMUG00000032211 I 0.973
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.946
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.946
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.973
Lin28a Mus musculus ENSMUSG00000050966 I 0.973
Lin28b Mus musculus ENSMUSG00000063804 I 0.919
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.973
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.946
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.946
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.973
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.946
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.973
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.973
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.973
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.973
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.973
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.946
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.892
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.973
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.973
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.946
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.946
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.973
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.973
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.865
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.973
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.946
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.946
ENSPSIG00000018001 Pelodiscus sinensis ENSPSIG00000018001 I 0.973
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.973
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.946
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.946
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.973
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.919
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.973
LIN28B Sorex araneus ENSSARG00000008374 I 0.946
ENSSHAG00000012716 Sarcophilus harrisii ENSSHAG00000012716 I 0.946
LIN28A Sus scrofa ENSSSCG00000003557 I 0.973
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.946
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.919
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.973
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 1.000
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.838
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.892
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.865
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.946
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.973
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.973
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.946
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.973
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.865
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.973
Aan_R002277 Calypte anna Aan_R002277 I 0.865
Aan_R005866 Calypte anna Aan_R005866 I 1.000
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 1.000
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 1.000
Brh_R006709 Buceros rhinoceros Brh_R006709 I 1.000
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 1.000
Cmyd_10021069 Chelonia mydas Cmyd_10021069 I 0.946
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.973
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.946
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.946
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.973
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.973
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.973
Ogr14286 Ophisaurus gracilis Ogr14286 I 0.838
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.946
Pvit_17184 Pogona vitticeps Pvit_17184 I 1.000
Tal_R007754 Tyto alba Tal_R007754 I 1.000
yakA12818 Bos grunniens yakA12818 I 0.919
yakG040859 Bos grunniens yakG040859 I 0.946
lin28a.S Xenopus laevis XB-GENE-866059 I 0.919