Carubv10004178m.g (Capsella rubella)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Carubv10004178m.g T181264_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.933 0.933
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.933 0.933
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10004178m FAR1 65 153

Links

Other FAR1 family TFs
Other Capsella rubella TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
klu Drosophila melanogaster FBgn0013469 D
AMEM009101 Anopheles merus AMEM009101 I
CGOC_0000202301 Cylicostephanus goldi CGOC_0000202301 I
BXY_0483000 Bursaphelenchus xylophilus BXY_0483000 I
ASU_11043 Ascaris suum ASU_11043 I
ANCCAN_10701 Ancylostoma caninum ANCCAN_10701 I
PPAI001591 Phlebotomus papatasi PPAI001591 I
MDOA010298 Musca domestica MDOA010298 I
ASIS008116 Anopheles sinensis ASIS008116 I
AMIN006836 Anopheles minimus AMIN006836 I
EEL_0000130601 Elaeophora elaphi EEL_0000130601 I
AMEC014989 Anopheles melas AMEC014989 I
AMAM001551 Anopheles maculatus AMAM001551 I
AFUN008770 Anopheles funestus AFUN008770 I
AFAF007233 Anopheles farauti AFAF007233 I
ACUA004708 Anopheles culicifacies ACUA004708 I
ACOM026725 Anopheles coluzzii ACOM026725 I
AATE009348 Anopheles atroparvus AATE009348 I
LDEC006538 Leptinotarsa decemlineata LDEC006538 I
GPLIN_001505900 Globodera pallida GPLIN_001505900 I
HCOI02146900 Haemonchus contortus HCOI02146900 I
L596_g19227 Steinernema carpocapsae L596_g19227 I
L892_g30369 Steinernema scapterisci L892_g30369 I
L898_g5287 Steinernema monticolum L898_g5287 I
MhA1_Contig1668.frz3.gene4 Meloidogyne hapla MhA1_Contig1668.frz3.gene4 I
MhA1_Contig3096.frz3.gene1 Meloidogyne hapla MhA1_Contig3096.frz3.gene1 I
nAv.1.0.1.g02699 Acanthocheilonema viteae nAv.1.0.1.g02699 I
nDi.2.2.2.g07689 Dirofilaria immitis nDi.2.2.2.g07689 I
nLs.2.1.2.g02913 Litomosoides sigmodontis nLs.2.1.2.g02913 I
PTRK_0000952000 Parastrongyloides trichosuri PTRK_0000952000 I
PTRK_0001586500 Parastrongyloides trichosuri PTRK_0001586500 I
scaffold108-EXSNAP2012.21 Pristionchus exspectatus scaffold108-EXSNAP2012.21 I
SPAL_0000289400 Strongyloides papillosus SPAL_0000289400 I
SVE_1611300 Strongyloides venezuelensis SVE_1611300 I
GA23784 Drosophila pseudoobscura FBgn0245183 I
ACEP27848 Atta cephalotes ACEP27848 I
ACYPI004750 Acyrthosiphon pisum ACYPI004750 I
ADAC007677 Anopheles darlingi ADAC007677 I
AGAP009899 Anopheles gambiae AGAP009899 I
Bm9026 Brugia malayi Bm9026 I
GF23812 Drosophila ananassae FBgn0100806 I
GG13951 Drosophila erecta FBgn0106213 I
GH16578 Drosophila grimshawi FBgn0124049 I
GI13870 Drosophila mojavensis FBgn0136624 I
GL15747 Drosophila persimilis FBgn0153351 I
GM24789 Drosophila sechellia FBgn0179651 I
GD12837 Drosophila simulans FBgn0184562 I
GJ11729 Drosophila virilis FBgn0198983 I
GK18880 Drosophila willistoni FBgn0220878 I
GE20250 Drosophila yakuba FBgn0237569 I
AAEL013544 Aedes aegypti AAEL013544 I
GB42180 Apis mellifera GB42180 I
ISCW010362 Ixodes scapularis ISCW010362 I
L798_04121 Zootermopsis nevadensis L798_04121 I
LOAG_17546 Loa loa LOAG_17546 I
NV17203 Nasonia vitripennis NV17203 I
PHUM540640 Pediculus humanus PHUM540640 I
PPA26808 Pristionchus pacificus PPA26808 I
RPRC001140 Rhodnius prolixus RPRC001140 I
SINV25082 Solenopsis invicta SINV25082 I
SMAR002322 Strigamia maritima SMAR002322 I
TC002783 Tribolium castaneum TC002783 I
WBGene00248644 Onchocerca volvulus WBGene00248644 I
YQE_09824 Dendroctonus ponderosae YQE_09824 I
HHAL008432-PA Halyomorpha halys HHAL008432-PA I
LCUP004097 Lucilia cuprina LCUP004097 I