foxp2 (Gasterosteus aculeatus)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00250 (Forkhead) IPR001766 ENSGACG00000018911 T185854_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Foxp2
M00792_2.00 		Mus musculus
RTAAACAD
HTGTTTAY		 PBM
Weirauch et al.(2013)
pTH1288 		0.817 0.951
FOXP2
M05866_2.00 		Homo sapiens
RTAAAYAWNN
NNWTRTTTAY		 SMiLE-seq
Isakova et al.(2017)
FOXP2 		0.817 0.951
FOXP2
M08116_2.00 		Homo sapiens
NDGTAAACAVN
NBTGTTTACHN		 ChIP-seq
Mathelier et al.(2014)
MA0593.1 		0.817 0.951
FOXP2
M09089_2.00 		Homo sapiens
DGTAAACAV
BTGTTTACH		 Misc
Kulakovskiy et al.(2013)
FOXP2_HUMAN.H11MO.0.C 		0.817 0.951
Foxp2
M09101_2.00 		Mus musculus
NGTAAACAN
NTGTTTACN		 Misc
Kulakovskiy et al.(2013)
FOXP2_MOUSE.H11MO.0.A 		0.817 0.951
FOXP1
M00836_2.00 		Homo sapiens
NRTMAACANN
NNTGTTKAYN		 PBM
Gabut et al.(2011)
pEX0123 		0.751 0.877
FOXP1
M00837_2.00 		Homo sapiens
DGTAAACAA
TTGTTTACH		 PBM
Gabut et al.(2011)
pEX0124 		0.751 0.877
FOXP1
M01976_2.00 		Homo sapiens
RTAAACAA
TTGTTTAY		 PBM
Weirauch et al.(2014)
pTH5656 		0.751 0.877
Foxp1
M00793_2.00 		Mus musculus
NRTMAAYAN
NTRTTKAYN		 PBM
Weirauch et al.(2013)
pTH3855 		0.751 0.877
FOXP1
M04811_2.00 		Homo sapiens
NTGTTTRYNRTNNNNNNBNAYRVWMAACAN
NTGTTKWBYRTNVNNNNNNAYNRYAAACAN		 SELEX
Yin et al.(2017)
FOXP1_eDBD_HT-SELEX 		0.751 0.877
FOXP1
M08115_2.00 		Homo sapiens
NDGTAAACAVNN
NNBTGTTTACHN		 ChIP-seq
Mathelier et al.(2014)
MA0481.2 		0.751 0.877
FOXP1
M09086_2.00 		Homo sapiens
RKAAACAVM
KBTGTTTMY		 Misc
Kulakovskiy et al.(2013)
FOXP1_HUMAN.H11MO.0.A 		0.751 0.877
FOXP1
M09541_2.00 		Homo sapiens
NDGTAAACAVNN
NNBTGTTTACHN		 Misc
Heinz et al.(2010)
H9-FOXP1_GSE31006 		0.751 0.877
FOXP1
M10536_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FOXP1_01 		0.751 0.877
FOXP1
M04812_2.00 		Homo sapiens
NTGTTTRYBRTNNNNNNBNAYRVWMAACAH
DTGTTKWBYRTNVNNNNNNAYVRYAAACAN		 SELEX
Yin et al.(2017)
FOXP1_eDBD_Methyl-HT-SELEX 		0.751 0.877
FoxP
M03753_2.00 		Drosophila melanogaster
AAACAACAACAA
TTGTTGTTGTTT		 SELEX
Nitta et al.(2015)
CG16899_1 		0.725 0.741
FoxP
M06201_2.00 		Drosophila melanogaster
VRTAAACAA
TTGTTTAYB		 B1H
Zhu et al.(2011)
CG16899_SANGER_5_FBgn0037735 		0.725 0.741
FoxP
M06202_2.00 		Drosophila melanogaster
VNNVBBAAAAAAAD
HTTTTTTTVVBNNB		 B1H
Zhu et al.(2011)
CG2052_SANGER_2.5_FBgn0039905 		0.725 0.741
FoxP
M06203_2.00 		Drosophila melanogaster
NNNNNRAAAAAAWNN
NNWTTTTTTYNNNNN		 B1H
Zhu et al.(2011)
CG2052_SOLEXA_2.5_FBgn0039905 		0.725 0.741
croc
M03744_2.00 		Drosophila melanogaster
WRYGTMAACAH
DTGTTKACRYW		 SELEX
Nitta et al.(2015)
croc_1 		0.667 0.444
croc
M10571_2.00 		Drosophila melanogaster
HWNARTAAATAKNNNV
BNNNMTATTTAYYNWD		 Transfac
Matys et al.(2006)
I$CROC_01 		0.667 0.444
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000025005 Forkhead 478 562
ENSGACP00000025007 Forkhead 158 185

Links

Other Forkhead family TFs
Other Gasterosteus aculeatus TFs

407 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
APRR2 Arabidopsis thaliana AT4G18020 D
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I
Carubv10026528m.g Capsella rubella Carubv10026528m.g I
Carubv10004540m.g Capsella rubella Carubv10004540m.g I
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I
Cucsa.321580 Cucumis sativus Cucsa.321580 I
Cucsa.313480 Cucumis sativus Cucsa.313480 I
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I
PK19826.1 Cannabis sativa PK19826.1 I
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I
MDP0000248863 Malus domestica MDP0000248863 I
MDP0000237396 Malus domestica MDP0000237396 I
Lus10040109.g Linum usitatissimum Lus10040109.g I
Lus10030938.g Linum usitatissimum Lus10030938.g I
Lus10011044.g Linum usitatissimum Lus10011044.g I
Lus10003013.g Linum usitatissimum Lus10003013.g I
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I
MTR_5g014040 Medicago truncatula MTR_5g014040 I
MTR_4g098870 Medicago truncatula MTR_4g098870 I
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I
GLYMA17G16360 Glycine max GLYMA17G16360 I
GLYMA11G04441 Glycine max GLYMA11G04441 I
GLYMA05G06070 Glycine max GLYMA05G06070 I
GLYMA01G40900 Glycine max GLYMA01G40900 I
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I
Bra013279 Brassica rapa Bra013279 I
Bra013278 Brassica rapa Bra013278 I
Bra013277 Brassica rapa Bra013277 I
Bra012623 Brassica rapa Bra012623 I
Bo7g105690 Brassica oleracea Bo7g105690 I
Bo1g019180 Brassica oleracea Bo1g019180 I
GLK2 Arabidopsis thaliana AT5G44190 I
TCM_015780 Theobroma cacao TCM_015780 I
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I
30054.m000786 Ricinus communis 30054.m000786 I
Pm014733 Prunus mume Pm014733 I
Cla016403 Citrullus lanatus Cla016403 I
Cla008926 Citrullus lanatus Cla008926 I
Ca_24009 Cicer arietinum Ca_24009 I
Ca_12825 Cicer arietinum Ca_12825 I
Ca_02285 Cicer arietinum Ca_02285 I
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I