Gcm1 (Mus musculus)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSMUSG00000023333 T198024_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gcm1
M00168_2.00		 Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.993 0.993
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.935 0.935
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.935 0.935
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.935 0.935
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.935 0.935
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.935 0.935
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.935 0.935
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.935 0.935
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.935 0.935
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.935 0.935
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.913 0.913
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.891 0.891
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.754 0.754
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.725 0.725
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.710 0.710
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.710 0.710
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.710 0.710
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.710 0.710
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.710 0.710
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.616 0.616
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.616 0.616
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.616 0.616
For this family, TFs with SR scores > 0.607 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00168_2.00 GCM 30 167

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000024104 GCM 30 167

Links

Other GCM family TFs
Other Mus musculus TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GCM2 Homo sapiens ENSG00000124827 D 0.710
GCM1 Homo sapiens ENSG00000137270 D 0.935
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.891
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.993
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.754
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.710
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.725
gcm2 Drosophila melanogaster FBgn0019809 D 0.616
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.913
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.614
AAEL000623 Aedes aegypti AAEL000623 I 0.645
AGAP007783 Anopheles gambiae AGAP007783 I 0.630
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.623
CapteG133139 Capitella teleta CapteG133139 I 0.630
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.645
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.614
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.623
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.746
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.739
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.703
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.949
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.725
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.754
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.891
GCM1 Bos taurus ENSBTAG00000008148 I 0.935
GCM2 Bos taurus ENSBTAG00000018787 I 0.717
GCM1 Canis familiaris ENSCAFG00000002273 I 0.957
GCM2 Canis familiaris ENSCAFG00000009747 I 0.710
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.703
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.935
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.710
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.942
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.710
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.710
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.935
gcm2 Danio rerio ENSDARG00000045413 I 0.761
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.696
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.913
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.928
GCM1 Equus caballus ENSECAG00000014228 I 0.949
GCM2 Equus caballus ENSECAG00000017632 I 0.703
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.688
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.783
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.891
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.754
GCM2 Felis catus ENSFCAG00000001608 I 0.710
GCM1 Felis catus ENSFCAG00000009490 I 0.957
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.717
GCM2 Gallus gallus ENSGALG00000012768 I 0.746
GCM1 Gallus gallus ENSGALG00000016316 I 0.884
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.935
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.710
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.710
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.783
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.732
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.681
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.928
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.717
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.754
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.957
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.746
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.913
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.717
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.913
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.688
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.710
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.935
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.717
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.964
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.710
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.957
Gcm2 Mus musculus ENSMUSG00000021362 I 0.703
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.710
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.935
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.710
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.935
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.717
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.953
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.710
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.899
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.696
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.732
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.790
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.703
gcm2 Oryzias latipes ENSORLG00000019715 I 0.725
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.717
GCM2 Procavia capensis ENSPCAG00000011887 I 0.681
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.732
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.732
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.710
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.935
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.732
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.913
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.710
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.935
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.681
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.920
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.696
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.717
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.964
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.913
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.688
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.819
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.920
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.710
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.877
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.623
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.870
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.710
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.710
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.913
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.703
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.906
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.732
GF21907 Drosophila ananassae FBgn0098907 I 0.609
GF22779 Drosophila ananassae FBgn0099773 I 0.616
GG10041 Drosophila erecta FBgn0102353 I 0.616
GM17569 Drosophila sechellia FBgn0172477 I 0.616
GE18856 Drosophila yakuba FBgn0236239 I 0.623
HMEL005671 Heliconius melpomene HMEL005671 I 0.623
ISCW022914 Ixodes scapularis ISCW022914 I 0.609
KGM_05743 Danaus plexippus KGM_05743 I 0.614
L798_07938 Zootermopsis nevadensis L798_07938 I 0.609
LotgiG112320 Lottia gigantea LotgiG112320 I 0.609
MCINX011946 Melitaea cinxia MCINX011946 I 0.623
SINV21711 Solenopsis invicta SINV21711 I 0.609
TC014730 Tribolium castaneum TC014730 I 0.614
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.636
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.623
Aan_R001196 Calypte anna Aan_R001196 I 0.891
Aan_R001550 Calypte anna Aan_R001550 I 0.754
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.870
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.754
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.775
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.739
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.870
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.761
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.609
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.717
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.935
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.935
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.717
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.710
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.754
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.877
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.913
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.630
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.884
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.725
Tal_R009935 Tyto alba Tal_R009935 I 0.870
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.630
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.630
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.630
CLEC013329 Cimex lectularius CLEC013329 I 0.609
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.623
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.732
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.826
gcm2.S Xenopus laevis XB-GENE-866131 I 0.732
AALB008013 Anopheles albimanus AALB008013 I 0.616
AARA011980 Anopheles arabiensis AARA011980 I 0.623
AATE008476 Anopheles atroparvus AATE008476 I 0.616
ACHR001414 Anopheles christyi ACHR001414 I 0.621
ACUA009622 Anopheles culicifacies ACUA009622 I 0.621
ADIR000711 Anopheles dirus ADIR000711 I 0.623
AEPI007160 Anopheles epiroticus AEPI007160 I 0.621
AFAF005680 Anopheles farauti AFAF005680 I 0.623
AFUN009837 Anopheles funestus AFUN009837 I 0.638
AMAM003661 Anopheles maculatus AMAM003661 I 0.630
AMIN006368 Anopheles minimus AMIN006368 I 0.630
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.630
ASIS002985 Anopheles sinensis ASIS002985 I 0.616
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.630
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.616