ENSAMEG00000005982 (Ailuropoda melanoleuca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSAMEG00000005982 T206897_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.867 1.000
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.867 1.000
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.867 1.000
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.867 1.000
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.867 1.000
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.867 1.000
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.867 1.000
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.867 1.000
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.866 0.945
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.866 0.945
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.866 0.945
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.866 0.945
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.866 0.945
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.866 0.945
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.866 0.945
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.866 0.945
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.865 0.982
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.865 0.982
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.865 0.982
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.865 0.982
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.865 0.982
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.865 0.982
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.865 0.982
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.865 0.982
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.865 0.982
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.865 0.982
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.708 0.709
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.708 0.709
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.708 0.709
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.708 0.709
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.708 0.709
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.708 0.673
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.708 0.673
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.708 0.673
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.708 0.673
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.708 0.673
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.708 0.655
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.708 0.655
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.708 0.655
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.708 0.655
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.664 0.618
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMEP00000006311 Homeodomain 127 181

Links

Other Homeodomain family TFs
Other Ailuropoda melanoleuca TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EIL3 Arabidopsis thaliana AT1G73730 D
OS09G0490200 Oryza sativa OS09G0490200 D
Traes_7BS_733347AC0 Triticum aestivum Traes_7BS_733347AC0 I
Aquca_007_00017 Aquilegia coerulea Aquca_007_00017 I
mgf020935m Mimulus guttatus mgf020935m I
Cucsa.143220 Cucumis sativus Cucsa.143220 I
cassava2120.valid.m1 Manihot esculenta cassava2120.valid.m1 I
30169.m006395 Ricinus communis 30169.m006395 I
Pm028171 Prunus mume Pm028171 I
EIL3 Vitis vinifera VIT_06s0004g01610 I
TRIUR3_28079 Triticum urartu TRIUR3_28079 I
TRIUR3_08597 Triticum urartu TRIUR3_08597 I
Traes_7DS_3673F1C73 Triticum aestivum Traes_7DS_3673F1C73 I
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I
Traes_7AS_34D476D5D1 Triticum aestivum Traes_7AS_34D476D5D1 I
Traes_5BL_B6051DD37 Triticum aestivum Traes_5BL_B6051DD37 I
Traes_5AL_B65EF5518 Triticum aestivum Traes_5AL_B65EF5518 I
TCM_040510 Theobroma cacao TCM_040510 I
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I
Solyc01g006650.1 Solanum lycopersicum Solyc01g006650.1 I
Si029259m.g Setaria italica Si029259m.g I
Si013426m.g Setaria italica Si013426m.g I
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I
PDK_20s1301801g002 Phoenix dactylifera PDK_20s1301801g002 I
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I
PK19114.1 Cannabis sativa PK19114.1 I
SapurV1A.0850s0030 Salix purpurea SapurV1A.0850s0030 I
SapurV1A.0009s0320 Salix purpurea SapurV1A.0009s0320 I
Pavir.J14329 Panicum virgatum Pavir.J14329 I
Pavir.J02229 Panicum virgatum Pavir.J02229 I
Pavir.Fb01951 Panicum virgatum Pavir.Fb01951 I
Pavir.Fa00424 Panicum virgatum Pavir.Fa00424 I
Sb02g028390 Sorghum bicolor Sb02g028390 I
MDP0000565880 Malus domestica MDP0000565880 I
MDP0000562585 Malus domestica MDP0000562585 I
MDP0000490180 Malus domestica MDP0000490180 I
Lus10031817.g Linum usitatissimum Lus10031817.g I
Lus10031245.g Linum usitatissimum Lus10031245.g I
Gorai.010G128700 Gossypium raimondii Gorai.010G128700 I
Gorai.009G071400 Gossypium raimondii Gorai.009G071400 I
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I
GSMUA_Achr3G11160_001 Musa acuminata GSMUA_Achr3G11160_001 I
OB09G21280 Oryza brachyantha OB09G21280 I
OB08G26880 Oryza brachyantha OB08G26880 I
MTR_2g098470 Medicago truncatula MTR_2g098470 I
MLOC_10823 Hordeum vulgare MLOC_10823 I
MLOC_10315 Hordeum vulgare MLOC_10315 I
LPERR09G10870 Leersia perrieri LPERR09G10870 I
LPERR08G16890 Leersia perrieri LPERR08G16890 I
GSMUA_Achr9G27680_001 Musa acuminata GSMUA_Achr9G27680_001 I
GSMUA_Achr8G25580_001 Musa acuminata GSMUA_Achr8G25580_001 I
OBART08G19960 Oryza barthii OBART08G19960 I
GRMZM2G006752 Zea mays GRMZM2G006752 I
GLYMA15G03650 Glycine max GLYMA15G03650 I
GLYMA13G41751 Glycine max GLYMA13G41751 I
F775_17920 Aegilops tauschii F775_17920 I
BRADI4G33750 Brachypodium distachyon BRADI4G33750 I
BRADI3G39970 Brachypodium distachyon BRADI3G39970 I
BGIOSGA029545 Oryza indica BGIOSGA029545 I
BGIOSGA026709 Oryza indica BGIOSGA026709 I
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I
ORGLA09G0113600 Oryza glaberrima ORGLA09G0113600 I
AC234203.1_FG011 Zea mays AC234203.1_FG011 I
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I
POPTR_0003s22090 Populus trichocarpa POPTR_0003s22090 I
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I
PGSC0003DMG400021381 Solanum tuberosum PGSC0003DMG400021381 I
OS08G0508700 Oryza sativa OS08G0508700 I
ORUFI09G15900 Oryza rufipogon ORUFI09G15900 I
ORUFI08G22370 Oryza rufipogon ORUFI08G22370 I
EIL3 Arabidopsis lyrata scaffold_202309.1 I
OPUNC09G13210 Oryza punctata OPUNC09G13210 I
OPUNC08G18080 Oryza punctata OPUNC08G18080 I
ONIVA08G22530 Oryza nivara ONIVA08G22530 I
ONIVA08G17420 Oryza nivara ONIVA08G17420 I
OMERI09G11470 Oryza meridionalis OMERI09G11470 I
OMERI08G16770 Oryza meridionalis OMERI08G16770 I
OGLUM09G15380 Oryza glumaepatula OGLUM09G15380 I
OGLUM08G21190 Oryza glumaepatula OGLUM08G21190 I
OBART09G14750 Oryza barthii OBART09G14750 I