six7 (Danio rerio)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSDARG00000070107 T208677_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.965
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.965
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.965
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.965
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.912
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.912
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.912
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.912
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.912
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.947
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.947
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.947
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.947
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.947
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.947
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.912
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.930
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000093395 Homeodomain 129 185

Links

Other Homeodomain family TFs
Other Danio rerio TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nhr-7 Caenorhabditis elegans WBGene00003606 D
WUBG_10752 Wuchereria bancrofti WUBG_10752 I
Bm12053 Brugia malayi Bm12053 I
Bm2389 Brugia malayi Bm2389 I
Bm4894 Brugia malayi Bm4894 I
CBG06052 Caenorhabditis briggsae CBG06052 I
CBG17744 Caenorhabditis briggsae CBG17744 I
CBG19594 Caenorhabditis briggsae CBG19594 I
CBG19604 Caenorhabditis briggsae CBG19604 I
CBN07936 Caenorhabditis brenneri CBN07936 I
CBN13729 Caenorhabditis brenneri CBN13729 I
CBN18797 Caenorhabditis brenneri CBN18797 I
CBN20828 Caenorhabditis brenneri CBN20828 I
CBN26258 Caenorhabditis brenneri CBN26258 I
CBN31048 Caenorhabditis brenneri CBN31048 I
CJA04720 Caenorhabditis japonica CJA04720 I
CJA08328 Caenorhabditis japonica CJA08328 I
CRE02711 Caenorhabditis remanei CRE02711 I
CRE06661 Caenorhabditis remanei CRE06661 I
CRE06667 Caenorhabditis remanei CRE06667 I
CRE10161 Caenorhabditis remanei CRE10161 I
CRE12779 Caenorhabditis remanei CRE12779 I
LOAG_01074 Loa loa LOAG_01074 I
LOAG_05485 Loa loa LOAG_05485 I
PPA21285 Pristionchus pacificus PPA21285 I
nhr-31 Caenorhabditis elegans WBGene00003625 I
nhr-88 Caenorhabditis elegans WBGene00003678 I
nhr-119 Caenorhabditis elegans WBGene00003709 I
WBGene00241236 Onchocerca volvulus WBGene00241236 I
WBGene00248075 Onchocerca volvulus WBGene00248075 I
Minc15420 Meloidogyne incognita Minc15420 I
ACAC_0000239001 Angiostrongylus cantonensis ACAC_0000239001 I
ACAC_0000409401 Angiostrongylus cantonensis ACAC_0000409401 I
ACAC_0001180201 Angiostrongylus cantonensis ACAC_0001180201 I
ACOC_0001326501 Angiostrongylus costaricensis ACOC_0001326501 I
ANCCAN_03474 Ancylostoma caninum ANCCAN_03474 I
ANCCAN_12539 Ancylostoma caninum ANCCAN_12539 I
ANCCEY_03357 Ancylostoma ceylanicum ANCCEY_03357 I
ANCCEY_05105 Ancylostoma ceylanicum ANCCEY_05105 I
ASIM_0001301101 Anisakis simplex ASIM_0001301101 I
ASIM_0001309901 Anisakis simplex ASIM_0001309901 I
ASU_01199 Ascaris suum ASU_01199 I
ASU_04305 Ascaris suum ASU_04305 I
BTMF_0001198801 Brugia timori BTMF_0001198801 I
BXY_0008800 Bursaphelenchus xylophilus BXY_0008800 I
BXY_0740100 Bursaphelenchus xylophilus BXY_0740100 I
BXY_1595900 Bursaphelenchus xylophilus BXY_1595900 I
BXY_1600300 Bursaphelenchus xylophilus BXY_1600300 I
DICVIV_02348 Dictyocaulus viviparus DICVIV_02348 I
DICVIV_10822 Dictyocaulus viviparus DICVIV_10822 I
DME_0000188101 Dracunculus medinensis DME_0000188101 I
DME_0000742401 Dracunculus medinensis DME_0000742401 I
DME_0000960901 Dracunculus medinensis DME_0000960901 I
EVEC_0001115901 Enterobius vermicularis EVEC_0001115901 I
genemark-nMf.1.1.scaf00140-processed-gene-0.6 Meloidogyne floridensis genemark-nMf.1.1.scaf00140-processed-gene-0.6 I
GPLIN_000268400 Globodera pallida GPLIN_000268400 I
GPLIN_001106000 Globodera pallida GPLIN_001106000 I
GPUH_0000393501 Gongylonema pulchrum GPUH_0000393501 I
Hba_06510 Heterorhabditis bacteriophora Hba_06510 I
Hba_14163 Heterorhabditis bacteriophora Hba_14163 I
Hba_14958 Heterorhabditis bacteriophora Hba_14958 I
HCOI00435200 Haemonchus contortus HCOI00435200 I
HCOI00769300 Haemonchus contortus HCOI00769300 I
HCOI01268300 Haemonchus contortus HCOI01268300 I
HCOI01406200 Haemonchus contortus HCOI01406200 I
HCOI01716000 Haemonchus contortus HCOI01716000 I
HPBE_0001043101 Heligmosomoides bakeri HPBE_0001043101 I
HPLM_0001092501 Haemonchus placei HPLM_0001092501 I
HPLM_0001680701 Haemonchus placei HPLM_0001680701 I
L596_g20569 Steinernema carpocapsae L596_g20569 I
L596_g25297 Steinernema carpocapsae L596_g25297 I
L596_g27086 Steinernema carpocapsae L596_g27086 I
L596_g3809 Steinernema carpocapsae L596_g3809 I
L889_g29204 Steinernema feltiae L889_g29204 I
L889_g5777 Steinernema feltiae L889_g5777 I
L889_g8361 Steinernema feltiae L889_g8361 I
L889_g8621 Steinernema feltiae L889_g8621 I
L893_g27201 Steinernema glaseri L893_g27201 I
L893_g29388 Steinernema glaseri L893_g29388 I
L893_g32432 Steinernema glaseri L893_g32432 I
L893_g6878 Steinernema glaseri L893_g6878 I
L898_g10316 Steinernema monticolum L898_g10316 I
L898_g24498 Steinernema monticolum L898_g24498 I
L898_g2799 Steinernema monticolum L898_g2799 I
L898_g4801 Steinernema monticolum L898_g4801 I
MhA1_Contig984.frz3.gene20 Meloidogyne hapla MhA1_Contig984.frz3.gene20 I
nAv.1.0.1.g01698 Acanthocheilonema viteae nAv.1.0.1.g01698 I
NBR_0000170601 Nippostrongylus brasiliensis NBR_0000170601 I
NBR_0001013001 Nippostrongylus brasiliensis NBR_0001013001 I
NBR_0001432001 Nippostrongylus brasiliensis NBR_0001432001 I
nDi.2.2.2.g02781 Dirofilaria immitis nDi.2.2.2.g02781 I
nDi.2.2.2.g03563 Dirofilaria immitis nDi.2.2.2.g03563 I
NECAME_05125 Necator americanus NECAME_05125 I
NECAME_12696 Necator americanus NECAME_12696 I
nLs.2.1.2.g08709 Litomosoides sigmodontis nLs.2.1.2.g08709 I
nOo.2.0.1.g04046 Onchocerca ochengi nOo.2.0.1.g04046 I
OESDEN_02652 Oesophagostomum dentatum OESDEN_02652 I
OESDEN_12257 Oesophagostomum dentatum OESDEN_12257 I
OESDEN_17109 Oesophagostomum dentatum OESDEN_17109 I
OFLC_0001511801 Onchocerca flexuosa OFLC_0001511801 I
PEQ_0000633601 Parascaris equorum PEQ_0000633601 I
PTRK_0000207700 Parastrongyloides trichosuri PTRK_0000207700 I
PTRK_0000497300 Parastrongyloides trichosuri PTRK_0000497300 I
PTRK_0000510500 Parastrongyloides trichosuri PTRK_0000510500 I
PTRK_0000775900 Parastrongyloides trichosuri PTRK_0000775900 I
RSKR_0000832300 Rhabditophanes kr3021 RSKR_0000832300 I
scaffold51-EXSNAP2012.23 Pristionchus exspectatus scaffold51-EXSNAP2012.23 I
scaffold601-EXSNAP2012.19 Pristionchus exspectatus scaffold601-EXSNAP2012.19 I
SMUV_0000212501 Syphacia muris SMUV_0000212501 I
SMUV_0000859101 Syphacia muris SMUV_0000859101 I
snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 Meloidogyne floridensis snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 I
SPAL_0000110800 Strongyloides papillosus SPAL_0000110800 I
SPAL_0000620000 Strongyloides papillosus SPAL_0000620000 I
SPAL_0001157400 Strongyloides papillosus SPAL_0001157400 I
SPAL_0001436300 Strongyloides papillosus SPAL_0001436300 I
SSTP_0000217700 Strongyloides stercoralis SSTP_0000217700 I
SSTP_0000662400 Strongyloides stercoralis SSTP_0000662400 I
SSTP_0000831700 Strongyloides stercoralis SSTP_0000831700 I
SSTP_0001234400 Strongyloides stercoralis SSTP_0001234400 I
SVE_0137800 Strongyloides venezuelensis SVE_0137800 I
SVE_0301400 Strongyloides venezuelensis SVE_0301400 I
SVE_1633700 Strongyloides venezuelensis SVE_1633700 I
SVE_1965700 Strongyloides venezuelensis SVE_1965700 I
TCLT_0000173501 Thelazia callipaeda TCLT_0000173501 I
TELCIR_05080 Teladorsagia circumcincta TELCIR_05080 I
TELCIR_07363 Teladorsagia circumcincta TELCIR_07363 I
CBN25890 Caenorhabditis brenneri CBN25890 N
ANCCAN_09370 Ancylostoma caninum ANCCAN_09370 N
ANCDUO_09404 Ancylostoma duodenale ANCDUO_09404 N
BTMF_0000225801 Brugia timori BTMF_0000225801 N
EVEC_0000733201 Enterobius vermicularis EVEC_0000733201 N
maker-nMf.1.1.scaf03124-snap-gene-0.5 Meloidogyne floridensis maker-nMf.1.1.scaf03124-snap-gene-0.5 N
nAv.1.0.1.g09235 Acanthocheilonema viteae nAv.1.0.1.g09235 N
nOo.2.0.1.g02048 Onchocerca ochengi nOo.2.0.1.g02048 N
RSKR_0000868400 Rhabditophanes kr3021 RSKR_0000868400 N