Sb01g028160 (Sorghum bicolor)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Sb01g028160 T222945_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.857 0.842
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.850 0.772
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.850 0.772
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.841 0.789
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.841 0.789
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.839 0.754
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.839 0.754
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.812 0.754
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.812 0.754
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.797 0.754
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.797 0.754
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.797 0.754
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.791 0.649
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.754 0.649
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.754 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb01g028160.1 Homeodomain 86 142

Links

Other Homeodomain family TFs
Other Sorghum bicolor TFs

618 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GPRI1 Arabidopsis thaliana AT2G20570 D
APRR2 Arabidopsis thaliana AT4G18020 D
AMTR_s00058p00133630 Amborella trichopoda AMTR_s00058p00133630 I
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I
GLK2 Arabidopsis thaliana AT5G44190 I
Bo1g019180 Brassica oleracea Bo1g019180 I
Bo7g067200 Brassica oleracea Bo7g067200 I
Bo7g105690 Brassica oleracea Bo7g105690 I
Bra012623 Brassica rapa Bra012623 I
Bra013277 Brassica rapa Bra013277 I
Bra013278 Brassica rapa Bra013278 I
Bra013279 Brassica rapa Bra013279 I
Bra033726 Brassica rapa Bra033726 I
GPRI1 Arabidopsis lyrata fgenesh2_kg.3__3588__AT2G20570.1 I
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I
GLYMA01G40900 Glycine max GLYMA01G40900 I
GLYMA05G06070 Glycine max GLYMA05G06070 I
GLYMA11G04441 Glycine max GLYMA11G04441 I
GLYMA17G16360 Glycine max GLYMA17G16360 I
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I
GSMUA_Achr2G18200_001 Musa acuminata GSMUA_Achr2G18200_001 I
MTR_4g098870 Medicago truncatula MTR_4g098870 I
MTR_5g014040 Medicago truncatula MTR_5g014040 I
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I
POPTR_0007s01230 Populus trichocarpa POPTR_0007s01230 I
POPTR_0017s04720 Populus trichocarpa POPTR_0017s04720 I
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I
PRUPE_ppa014599mg Prunus persica PRUPE_ppa014599mg I
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I
TCM_008193 Theobroma cacao TCM_008193 I
TCM_015780 Theobroma cacao TCM_015780 I
APRR2 Vitis vinifera VIT_02s0012g00570 I
Ca_02285 Cicer arietinum Ca_02285 I
Ca_12825 Cicer arietinum Ca_12825 I
Ca_24009 Cicer arietinum Ca_24009 I
Cla003791 Citrullus lanatus Cla003791 I
Cla008926 Citrullus lanatus Cla008926 I
Cla016403 Citrullus lanatus Cla016403 I
Pm014123 Prunus mume Pm014123 I
Pm014733 Prunus mume Pm014733 I
29983.m003131 Ricinus communis 29983.m003131 I
30054.m000786 Ricinus communis 30054.m000786 I
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I
cassava43649.valid.m1 Manihot esculenta cassava43649.valid.m1 I
cassava43650.valid.m1 Manihot esculenta cassava43650.valid.m1 I
Cucsa.087530 Cucumis sativus Cucsa.087530 I
Cucsa.313480 Cucumis sativus Cucsa.313480 I
Cucsa.321580 Cucumis sativus Cucsa.321580 I
mgf007181m Mimulus guttatus mgf007181m I
mgf012846m Mimulus guttatus mgf012846m I
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I
Bostr.7903s0106 Boechera stricta Bostr.7903s0106 I
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I
Cagra.2516s0014 Capsella grandiflora Cagra.2516s0014 I
Carubv10004540m.g Capsella rubella Carubv10004540m.g I
Carubv10014114m.g Capsella rubella Carubv10014114m.g I
Carubv10026528m.g Capsella rubella Carubv10026528m.g I
Ciclev10015266m.g Citrus clementina Ciclev10015266m.g I
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I
gene17750-v1.0-hybrid Fragaria vesca gene17750-v1.0-hybrid I
Gorai.002G020300 Gossypium raimondii Gorai.002G020300 I
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I
Gorai.012G126600 Gossypium raimondii Gorai.012G126600 I
Lus10003013.g Linum usitatissimum Lus10003013.g I
Lus10011044.g Linum usitatissimum Lus10011044.g I
Lus10018649.g Linum usitatissimum Lus10018649.g I
Lus10030938.g Linum usitatissimum Lus10030938.g I
Lus10033642.g Linum usitatissimum Lus10033642.g I
Lus10039883.g Linum usitatissimum Lus10039883.g I
Lus10040109.g Linum usitatissimum Lus10040109.g I
MDP0000225179 Malus domestica MDP0000225179 I
MDP0000237396 Malus domestica MDP0000237396 I
MDP0000248863 Malus domestica MDP0000248863 I
MDP0000526864 Malus domestica MDP0000526864 I
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I
orange1.1g013528m.g Citrus sinensis orange1.1g013528m.g I
SapurV1A.0118s0260 Salix purpurea SapurV1A.0118s0260 I
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I
SapurV1A.0693s0070 Salix purpurea SapurV1A.0693s0070 I
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I
SapurV1A.1950s0030 Salix purpurea SapurV1A.1950s0030 I
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I
PK27491.1 Cannabis sativa PK27491.1 I
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I