fgenesh1_pg.scaffold_258000001 (Physcomitrella patens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 fgenesh1_pg.scaffold_258000001 T227482_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.827 0.745
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.638 0.596
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.447
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.447
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.447
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.447
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_258000001 Homeodomain 671 720

Links

Other Homeodomain family TFs
Other Physcomitrella patens TFs

1007 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_027113 Theobroma cacao TCM_027113 I 0.000
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.000
BRADI4G17410 Brachypodium distachyon BRADI4G17410 I 0.000
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.000
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.000
mgf006427m Mimulus guttatus mgf006427m N 0.000
TRAES3BF111600210CFD_g Triticum aestivum TRAES3BF111600210CFD_g N 0.000
TRIUR3_02890 Triticum urartu TRIUR3_02890 N 0.000
Cla001927 Citrullus lanatus Cla001927 N 0.000
29609.m000587 Ricinus communis 29609.m000587 N 0.000
cassava11453.m1 Manihot esculenta cassava11453.m1 N 0.000
cassava11454.m1 Manihot esculenta cassava11454.m1 N 0.000
cassava11455.m1 Manihot esculenta cassava11455.m1 N 0.000
cassava11456.m1 Manihot esculenta cassava11456.m1 N 0.000
cassava7098.valid.m1 Manihot esculenta cassava7098.valid.m1 N 0.000
cassava7099.valid.m1 Manihot esculenta cassava7099.valid.m1 N 0.000
Cucsa.183410 Cucumis sativus Cucsa.183410 N 0.000
Si025988m.g Setaria italica Si025988m.g N 0.000
mgf024961m Mimulus guttatus mgf024961m N 0.000
Aquca_100_00036 Aquilegia coerulea Aquca_100_00036 N 0.000
Cagra.0996s0001 Capsella grandiflora Cagra.0996s0001 N 0.000
Carubv10022415m.g Capsella rubella Carubv10022415m.g N 0.000
Ciclev10000491m.g Citrus clementina Ciclev10000491m.g N 0.000
Lus10007440.g Linum usitatissimum Lus10007440.g N 0.000
Lus10024455.g Linum usitatissimum Lus10024455.g N 0.000
SapurV1A.0225s0120 Salix purpurea SapurV1A.0225s0120 N 0.000
Thhalv10023326m.g Eutrema salsugineum Thhalv10023326m.g N 0.000
OGLUM12G13560 Oryza glumaepatula OGLUM12G13560 N 0.000
ARF1 Arabidopsis thaliana AT1G59750 N 0.000
BGIOSGA036199 Oryza indica BGIOSGA036199 N 0.000
Bo1g090350 Brassica oleracea Bo1g090350 N 0.000
Bo4g083590 Brassica oleracea Bo4g083590 N 0.000
Bra035427 Brassica rapa Bra035427 N 0.000
GLYMA07G40270 Glycine max GLYMA07G40270 N 0.000
GSMUA_Achr6G16450_001 Musa acuminata GSMUA_Achr6G16450_001 N 0.000
LPERR01G37140 Leersia perrieri LPERR01G37140 N 0.000
MLOC_18401 Hordeum vulgare MLOC_18401 N 0.000
OB01G51580 Oryza brachyantha OB01G51580 N 0.000
OBART12G11990 Oryza barthii OBART12G11990 N 0.000
Solyc01g103050.2 Solanum lycopersicum Solyc01g103050.2 N 0.000
OLONG_010675 Oryza longistaminata OLONG_010675 N 0.000
OLONG_019549 Oryza longistaminata OLONG_019549 N 0.000
OMERI12G08550 Oryza meridionalis OMERI12G08550 N 0.000
ONIVA12G12070 Oryza nivara ONIVA12G12070 N 0.000
OPUNC12G10620 Oryza punctata OPUNC12G10620 N 0.000
ORGLA12G0109100 Oryza glaberrima ORGLA12G0109100 N 0.000
ARF24 Oryza sativa OS12G0479400 N 0.000
POPTR_0003s00890 Populus trichocarpa POPTR_0003s00890 N 0.000
PRUPE_ppa002394mg Prunus persica PRUPE_ppa002394mg N 0.000
Sb05g019540 Sorghum bicolor Sb05g019540 N 0.000
AMTR_s00021p00221770 Amborella trichopoda AMTR_s00021p00221770 N 0.000