CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0996s0001
(
Capsella grandiflora
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
Cagra.0996s0001
T022736_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0996s0001.1.p
B3
124
226
FCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHM
Cagra.0996s0001.1.p
B3
569
615
LFKKLEEMFDIKGELIESTKKWQVVYTDDEDDMMMVGDDPWNEFCGM
Cagra.0996s0001.2.p
B3
124
226
FCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHM
Cagra.0996s0001.2.p
B3
569
615
LFKKLEEMFDIKGELIESTKKWQVVYTDDEDDMMMVGDDPWNEFCGM
Links
Other
B3
family TFs
Other
Capsella grandiflora
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10022415m.g
Capsella rubella
Carubv10022415m.g
N
1.000
ARF1
Arabidopsis lyrata
fgenesh2_kg.2__468__AT1G59750.1
N
0.958
Bo4g083590
Brassica oleracea
Bo4g083590
N
0.938
Lus10024455.g
Linum usitatissimum
Lus10024455.g
N
0.903
Eucgr.G00076
Eucalyptus grandis
Eucgr.G00076
I
0.898
Bo1g090350
Brassica oleracea
Bo1g090350
N
0.889
Bra035427
Brassica rapa
Bra035427
N
0.889
GLYMA12G28550
Glycine max
GLYMA12G28550
N
0.889
Lus10007440.g
Linum usitatissimum
Lus10007440.g
N
0.884
Cla001927
Citrullus lanatus
Cla001927
N
0.875
Cucsa.183410
Cucumis sativus
Cucsa.183410
N
0.875
Thhalv10023326m.g
Eutrema salsugineum
Thhalv10023326m.g
N
0.875
TCM_027113
Theobroma cacao
TCM_027113
I
0.873
29609.m000587
Ricinus communis
29609.m000587
N
0.871
Bostr.10040s0256
Boechera stricta
Bostr.10040s0256
N
0.870
ARF1
Arabidopsis thaliana
AT1G59750
N
0.869
Ciclev10000491m.g
Citrus clementina
Ciclev10000491m.g
N
0.854
mgf006427m
Mimulus guttatus
mgf006427m
N
0.845
PRUPE_ppa002394mg
Prunus persica
PRUPE_ppa002394mg
N
0.840
cassava11453.m1
Manihot esculenta
cassava11453.m1
N
0.833
cassava11454.m1
Manihot esculenta
cassava11454.m1
N
0.833
cassava11455.m1
Manihot esculenta
cassava11455.m1
N
0.833
cassava11456.m1
Manihot esculenta
cassava11456.m1
N
0.833
cassava7098.valid.m1
Manihot esculenta
cassava7098.valid.m1
N
0.833
cassava7099.valid.m1
Manihot esculenta
cassava7099.valid.m1
N
0.833
POPTR_0003s00890
Populus trichocarpa
POPTR_0003s00890
N
0.828
SapurV1A.0225s0120
Salix purpurea
SapurV1A.0225s0120
N
0.826
SapurV1A.0422s0040
Salix purpurea
SapurV1A.0422s0040
I
0.826
GLYMA07G40270
Glycine max
GLYMA07G40270
N
0.819
Solyc01g103050.2
Solanum lycopersicum
Solyc01g103050.2
N
0.812
PGSC0003DMG400020711
Solanum tuberosum
PGSC0003DMG400020711
I
0.800
Gorai.011G091100
Gossypium raimondii
Gorai.011G091100
N
0.785
Sb04g022830
Sorghum bicolor
Sb04g022830
N
0.766
Traes_2DL_A86E54838
Triticum aestivum
Traes_2DL_A86E54838
N
0.761
MLOC_64596
Hordeum vulgare
MLOC_64596
I
0.750
Cla015243
Citrullus lanatus
Cla015243
N
0.750
VIT_18s0089g00910
Vitis vinifera
VIT_18s0089g00910
N
0.743
BRADI4G17410
Brachypodium distachyon
BRADI4G17410
I
0.731
BGIOSGA008429
Oryza indica
BGIOSGA008429
N
0.729
OBART02G20600
Oryza barthii
OBART02G20600
N
0.729
OGLUM02G20880
Oryza glumaepatula
OGLUM02G20880
N
0.729
OLONG_012362
Oryza longistaminata
OLONG_012362
N
0.729
OMERI02G20310
Oryza meridionalis
OMERI02G20310
N
0.729
ONIVA02G22590
Oryza nivara
ONIVA02G22590
N
0.729
OPUNC02G18520
Oryza punctata
OPUNC02G18520
N
0.729
ORGLA02G0176700
Oryza glaberrima
ORGLA02G0176700
N
0.729
ORUFI02G21640
Oryza rufipogon
ORUFI02G21640
N
0.729
ARF7
Oryza sativa
OS02G0557200
N
0.729
Traes_2AL_89543BA1A
Triticum aestivum
Traes_2AL_89543BA1A
N
0.729
TRIUR3_33501
Triticum urartu
TRIUR3_33501
N
0.729
AMTR_s00021p00221770
Amborella trichopoda
AMTR_s00021p00221770
N
0.722
BGIOSGA036199
Oryza indica
BGIOSGA036199
N
0.716
OBART12G11990
Oryza barthii
OBART12G11990
N
0.716
OGLUM12G13560
Oryza glumaepatula
OGLUM12G13560
N
0.716
OLONG_019549
Oryza longistaminata
OLONG_019549
N
0.716
OMERI12G08550
Oryza meridionalis
OMERI12G08550
N
0.716
ONIVA12G12070
Oryza nivara
ONIVA12G12070
N
0.716
OPUNC12G10620
Oryza punctata
OPUNC12G10620
N
0.716
ORGLA12G0109100
Oryza glaberrima
ORGLA12G0109100
N
0.716
ARF24
Oryza sativa
OS12G0479400
N
0.716
Ca_17636
Cicer arietinum
Ca_17636
N
0.708
ORUFI12G13110
Oryza rufipogon
ORUFI12G13110
N
0.701