Pavir.J20612 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J20612 T229350_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.645 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J20612.1.p Homeodomain 49 105

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZBTB42 Homo sapiens ENSG00000179627 D
ENSONIG00000012149 Oreochromis niloticus ENSONIG00000012149 I
znf238.2 Xenopus tropicalis XB-GENE-1219066 I
Pvit_02527 Pogona vitticeps Pvit_02527 I
Ogr11588 Ophisaurus gracilis Ogr11588 I
ENSP00000409107 Macaca fascicularis ENSP00000409107 I
Alligator_sinensis_CCG020881.1 Alligator sinensis Alligator_sinensis_CCG020881.1 I
ENSXMAG00000006703 Xiphophorus maculatus ENSXMAG00000006703 I
zbtb42 Takifugu rubripes ENSTRUG00000013592 I
zbtb42 Tetraodon nigroviridis ENSTNIG00000000917 I
ENSSHAG00000008534 Sarcophilus harrisii ENSSHAG00000008534 I
ZBTB42 Pan troglodytes ENSPTRG00000040287 I
zbtb42 Oryzias latipes ENSORLG00000017008 I
ZBTB42 Anolis carolinensis ENSACAG00000011451 I
ZBTB42 Monodelphis domestica ENSMODG00000013701 I
ZBTB42 Meleagris gallopavo ENSMGAG00000015389 I
ENSLOCG00000012759 Lepisosteus oculatus ENSLOCG00000012759 I
ZBTB42 Gallus gallus ENSGALG00000023025 I
zbtb42 Gasterosteus aculeatus ENSGACG00000006297 I
zbtb42 Danio rerio ENSDARG00000102761 I
ENSCSAG00000019588 Chlorocebus sabaeus ENSCSAG00000019588 I
ENSAMEG00000007755 Ailuropoda melanoleuca ENSAMEG00000007755 I
ENSAMXG00000025635 Astyanax mexicanus ENSAMXG00000025635 N