ENSONIG00000007600 (Oreochromis niloticus)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSONIG00000007600 T244273_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.800 0.800
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.790 0.790
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.790 0.790
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.790 0.790
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.790 0.790
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.790 0.790
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.790 0.790
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.781 0.781
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.781 0.781
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.762 0.762
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.752 0.752
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.752 0.752
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.752 0.752
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.752 0.752
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.752 0.752
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.752 0.752
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.752 0.752
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.752 0.752
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSONIP00000009580 IRF 9 114

Links

Other IRF family TFs
Other Oreochromis niloticus TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.H02009 Eucalyptus grandis Eucgr.H02009 N
LjSGA_111419.1 Lotus japonicus LjSGA_111419.1 N
PK03938.1 Cannabis sativa PK03938.1 N
orange1.1g010160m.g Citrus sinensis orange1.1g010160m.g N
MDP0000314333 Malus domestica MDP0000314333 N
MDP0000258417 Malus domestica MDP0000258417 N
MDP0000236656 Malus domestica MDP0000236656 N
Lus10035416.g Linum usitatissimum Lus10035416.g N
Gorai.007G212100 Gossypium raimondii Gorai.007G212100 N
gene24052-v1.0-hybrid Fragaria vesca gene24052-v1.0-hybrid N
evm.TU.supercontig_55.163 Carica papaya evm.TU.supercontig_55.163 N
GLYMA17G20175 Glycine max GLYMA17G20175 N
Eucgr.H01651 Eucalyptus grandis Eucgr.H01651 N
Ciclev10025376m.g Citrus clementina Ciclev10025376m.g N
Cucsa.366830 Cucumis sativus Cucsa.366830 N
cassava2445.valid.m1 Manihot esculenta cassava2445.valid.m1 N
30115.m001183 Ricinus communis 30115.m001183 N
VIT_07s0031g00780 Vitis vinifera VIT_07s0031g00780 N
TCM_000597 Theobroma cacao TCM_000597 N
Solyc02g090710.2 Solanum lycopersicum Solyc02g090710.2 N
POPTR_0007s11170 Populus trichocarpa POPTR_0007s11170 N
PGSC0003DMG400015771 Solanum tuberosum PGSC0003DMG400015771 N