OLONG_001985 (Oryza longistaminata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OLONG_001985 T245593_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.867 0.867
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.867 0.867
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.844 0.844
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.844 0.844
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.822 0.822
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.822 0.822
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.822 0.822
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.756 0.756
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.756 0.756
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OLONG_001985-R1 LOB 35 125

Links

Other LOB family TFs
Other Oryza longistaminata TFs

349 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK15505.1 Cannabis sativa PK15505.1 D
Cucsa.117060 Cucumis sativus Cucsa.117060 I
AMTR_s00064p00208400 Amborella trichopoda AMTR_s00064p00208400 I
Si024546m.g Setaria italica Si024546m.g I
Solyc07g039570.2 Solanum lycopersicum Solyc07g039570.2 I
VIT_11s0016g02070 Vitis vinifera VIT_11s0016g02070 I
Cla017100 Citrullus lanatus Cla017100 I
29912.m005337 Ricinus communis 29912.m005337 I
cassava25701.m1 Manihot esculenta cassava25701.m1 I
cassava46879.m1 Manihot esculenta cassava46879.m1 I
PGSC0003DMG400022043 Solanum tuberosum PGSC0003DMG400022043 I
mgf018190m Mimulus guttatus mgf018190m I
Ciclev10007937m.g Citrus clementina Ciclev10007937m.g I
Eucgr.C03476 Eucalyptus grandis Eucgr.C03476 I
MDP0000119495 Malus domestica MDP0000119495 I
MDP0000252899 Malus domestica MDP0000252899 I
MDP0000782908 Malus domestica MDP0000782908 I
orange1.1g008967m.g Citrus sinensis orange1.1g008967m.g I
Pavir.Ca00825 Panicum virgatum Pavir.Ca00825 I
Pavir.J01638 Panicum virgatum Pavir.J01638 I
OBART05G06380 Oryza barthii OBART05G06380 I
PDK_20s1427741g002 Phoenix dactylifera PDK_20s1427741g002 I
BGIOSGA033976 Oryza indica BGIOSGA033976 I
Bo2g032920 Brassica oleracea Bo2g032920 I
GLYMA09G07391 Glycine max GLYMA09G07391 I
GLYMA15G18580 Glycine max GLYMA15G18580 I
LjT02N03.60.nd Lotus japonicus LjT02N03.60.nd I
GSMUA_Achr6G00900_001 Musa acuminata GSMUA_Achr6G00900_001 I
LPERR05G05410 Leersia perrieri LPERR05G05410 I
OB05G15870 Oryza brachyantha OB05G15870 I
POPTR_0006s15310 Populus trichocarpa POPTR_0006s15310 I
OGLUM05G06690 Oryza glumaepatula OGLUM05G06690 I
SapurV1A.0108s0270 Salix purpurea SapurV1A.0108s0270 I
OPUNC05G05910 Oryza punctata OPUNC05G05910 I
ORGLA05G0058200 Oryza glaberrima ORGLA05G0058200 I
ORUFI05G06870 Oryza rufipogon ORUFI05G06870 I
OS05G0199800 Oryza sativa OS05G0199800 I
PGSC0003DMG400000335 Solanum tuberosum PGSC0003DMG400000335 I
Sb09g006196 Sorghum bicolor Sb09g006196 N
ONIVA01G07090 Oryza nivara ONIVA01G07090 N
OGLUM01G06710 Oryza glumaepatula OGLUM01G06710 N
GRMZM2G175480 Zea mays GRMZM2G175480 N
BGIOSGA002941 Oryza indica BGIOSGA002941 N