Lus10024183.g (Linum usitatissimum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Lus10024183.g T247042_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.919 0.919
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.919 0.919
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10024183 LOB 22 120

Links

Other LOB family TFs
Other Linum usitatissimum TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD13 Arabidopsis thaliana AT2G30340 D 0.919
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.909
LBD15 Arabidopsis thaliana AT2G40470 I 0.909
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.848
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.859
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
Bo3g034980 Brassica oleracea Bo3g034980 I 0.919
Bo4g012620 Brassica oleracea Bo4g012620 I 0.879
Bo4g059520 Brassica oleracea Bo4g059520 I 0.919
Bo4g172950 Brassica oleracea Bo4g172950 I 0.919
Bo4g190140 Brassica oleracea Bo4g190140 I 0.816
Bo4g190210 Brassica oleracea Bo4g190210 I 0.889
Bra000188 Brassica rapa Bra000188 I 0.919
Bra004572 Brassica rapa Bra004572 I 0.879
Bra016992 Brassica rapa Bra016992 I 0.899
Bra018320 Brassica rapa Bra018320 I 0.919
Bra021627 Brassica rapa Bra021627 I 0.919
Bra022780 Brassica rapa Bra022780 I 0.707
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.818
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.848
F775_25790 Aegilops tauschii F775_25790 I 0.859
F775_52636 Aegilops tauschii F775_52636 I 0.838
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.919
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.909
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.899
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.899
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.899
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.909
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.838
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.859
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.869
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.828
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.848
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.828
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.848
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.859
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.859
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.838
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.869
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.899
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.869
OB01G44400 Oryza brachyantha OB01G44400 I 0.848
OB05G14280 Oryza brachyantha OB05G14280 I 0.798
OBART01G35680 Oryza barthii OBART01G35680 I 0.848
OBART05G04570 Oryza barthii OBART05G04570 I 0.859
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.848
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.859
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.848
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.788
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.848
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.859
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.848
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.859
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.848
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.848
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.859
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.848
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.859
OS01G0825000 Oryza sativa OS01G0825000 I 0.848
OS05G0165450 Oryza sativa OS05G0165450 I 0.859
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.717
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.859
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.869
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.879
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.879
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.879
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.889
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.909
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.899
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.838
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.869
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.828
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.828
Si004575m.g Setaria italica Si004575m.g I 0.848
Si012018m.g Setaria italica Si012018m.g I 0.879
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.879
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.869
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.889
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.717
TCM_032557 Theobroma cacao TCM_032557 I 0.707
TCM_042262 Theobroma cacao TCM_042262 I 0.909
TCM_045438 Theobroma cacao TCM_045438 I 0.909
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.838
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.838
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.838
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.848
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.859
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.869
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.909
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.717
Ca_04126 Cicer arietinum Ca_04126 I 0.899
Ca_12420 Cicer arietinum Ca_12420 I 0.859
Ca_15642 Cicer arietinum Ca_15642 I 0.859
Cla007391 Citrullus lanatus Cla007391 I 0.889
Cla009336 Citrullus lanatus Cla009336 I 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
Pm000277 Prunus mume Pm000277 I 0.889
29729.m002335 Ricinus communis 29729.m002335 I 0.909
29957.m001411 Ricinus communis 29957.m001411 I 0.919
30169.m006340 Ricinus communis 30169.m006340 I 0.707
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.909
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.899
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.707
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.919
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.889
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.859
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.848
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.848
mgf011471m Mimulus guttatus mgf011471m I 0.939
mgf020556m Mimulus guttatus mgf020556m I 0.889
mgf026046m Mimulus guttatus mgf026046m I 0.727
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.909
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.909
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.919
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.909
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.909
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.909
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.899
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.879
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.879
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.909
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.707
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.929
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.909
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.929
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.909
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.869
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.707
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.909
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.909
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.879
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.889
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.970
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.828
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.818
MDP0000278334 Malus domestica MDP0000278334 I 0.879
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.879
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.879
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.859
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.828
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.838
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.869
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.737
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.889
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.879
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.919
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.899
PK11564.1 Cannabis sativa PK11564.1 I 0.707
PK17217.1 Cannabis sativa PK17217.1 I 0.909
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.889
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.899
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.798
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.712
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.729