AMTR_s00006p00265300 (Amborella trichopoda)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AMTR_s00006p00265300 T247838_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.871 0.614
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.871 0.614
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.871 0.614
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.863 0.586
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN05877 MADF 111 187

Links

Other MADF family TFs
Other Amborella trichopoda TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK04914.1 Cannabis sativa PK04914.1 D 0.863
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.871
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.871
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.864
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.851
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.886
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.853
Ca_20148 Cicer arietinum Ca_20148 I 0.877
Cla018015 Citrullus lanatus Cla018015 I 0.877
Pm026265 Prunus mume Pm026265 I 0.866
28077.m000081 Ricinus communis 28077.m000081 I 0.875
29815.m000504 Ricinus communis 29815.m000504 I 0.886
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.886
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.877
mgf008067m Mimulus guttatus mgf008067m I 0.884
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.912
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.879
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.871
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.871
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.871
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.886
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.886
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.888
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.915
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.901
MDP0000201016 Malus domestica MDP0000201016 I 0.831
MDP0000399495 Malus domestica MDP0000399495 I 0.831
MDP0000415733 Malus domestica MDP0000415733 I 0.831
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.869
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.864
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.893
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.872
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.872
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.883
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.849
Bo5g137800 Brassica oleracea Bo5g137800 I 0.849
Bra029812 Brassica rapa Bra029812 I 0.849
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.883
F775_31501 Aegilops tauschii F775_31501 I 0.851
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.871
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.877
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.845
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.877
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.873
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.852
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.843
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.860
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.877
OB04G18670 Oryza brachyantha OB04G18670 I 0.819
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.864
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.832
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.849
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.849
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.877
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.893
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.871
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.871
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.866
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.838
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.867
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.813
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.813
Si009787m.g Setaria italica Si009787m.g I 0.873
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.877
TCM_022397 Theobroma cacao TCM_022397 I 0.883