fgenesh2_pg.scaffold_196000035 (Branchiostoma floridae)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 fgenesh2_pg.scaffold_196000035 T257355_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.979 0.979
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.979 0.979
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.979 0.979
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.979 0.979
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.979 0.979
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.979 0.979
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.979 0.979
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.979 0.979
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.979 0.979
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.979 0.979
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.979 0.979
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.979 0.979
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.979 0.979
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.979 0.979
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.979 0.979
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.979 0.979
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.979 0.979
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.979 0.979
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.979 0.979
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.979 0.979
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.979 0.979
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.979 0.979
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.979 0.979
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.979 0.979
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.917 0.917
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.875 0.875
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.792 0.792
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.792 0.792
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.792 0.792
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.792 0.792
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.792 0.792
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_196000035 MADS box 155 202

Links

Other MADS box family TFs
Other Branchiostoma floridae TFs

547 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMS Arabidopsis thaliana AT2G16910 D
SCRM Arabidopsis thaliana AT3G26744 D
AMTR_s00016p00170610 Amborella trichopoda AMTR_s00016p00170610 I
AMTR_s00019p00254380 Amborella trichopoda AMTR_s00019p00254380 I
SCRM2 Arabidopsis thaliana AT1G12860 I
BGIOSGA000206 Oryza indica BGIOSGA000206 I
BGIOSGA007229 Oryza indica BGIOSGA007229 I
BGIOSGA035358 Oryza indica BGIOSGA035358 I
Bo00285s440 Brassica oleracea Bo00285s440 I
Bo3g091780 Brassica oleracea Bo3g091780 I
Bo5g016510 Brassica oleracea Bo5g016510 I
Bo7g016210 Brassica oleracea Bo7g016210 I
Bo7g083870 Brassica oleracea Bo7g083870 I
Bo8g065080 Brassica oleracea Bo8g065080 I
Bo9g008020 Brassica oleracea Bo9g008020 I
Bra002004 Brassica rapa Bra002004 I
Bra013041 Brassica rapa Bra013041 I
Bra016749 Brassica rapa Bra016749 I
Bra019794 Brassica rapa Bra019794 I
Bra025226 Brassica rapa Bra025226 I
Bra032947 Brassica rapa Bra032947 I
Bra034246 Brassica rapa Bra034246 I
BRADI2G59497 Brachypodium distachyon BRADI2G59497 I
BRADI3G01901 Brachypodium distachyon BRADI3G01901 I
BRADI3G01910 Brachypodium distachyon BRADI3G01910 I
BRADI4G17460 Brachypodium distachyon BRADI4G17460 I
F775_14780 Aegilops tauschii F775_14780 I
F775_15875 Aegilops tauschii F775_15875 I
AMS Arabidopsis lyrata fgenesh2_kg.3__3272__AT2G16910.1 I
ICE1 Arabidopsis lyrata fgenesh2_kg.5__441__AT3G26744.2 I
GLYMA04G37750 Glycine max GLYMA04G37750 I
GLYMA05G38530 Glycine max GLYMA05G38530 I
GLYMA06G17330 Glycine max GLYMA06G17330 I
GLYMA10G42830 Glycine max GLYMA10G42830 I
GLYMA13G00480 Glycine max GLYMA13G00480 I
GLYMA16G05390 Glycine max GLYMA16G05390 I
GLYMA16G26291 Glycine max GLYMA16G26291 I
GLYMA17G06610 Glycine max GLYMA17G06610 I
GLYMA19G27483 Glycine max GLYMA19G27483 I
GLYMA20G24170 Glycine max GLYMA20G24170 I
GRMZM2G033356 Zea mays GRMZM2G033356 I
GRMZM2G119823 Zea mays GRMZM2G119823 I
GRMZM2G172297 Zea mays GRMZM2G172297 I
GRMZM2G173534 Zea mays GRMZM2G173534 I
GSMUA_Achr10G12060_001 Musa acuminata GSMUA_Achr10G12060_001 I
GSMUA_Achr10G18380_001 Musa acuminata GSMUA_Achr10G18380_001 I
GSMUA_Achr10G23370_001 Musa acuminata GSMUA_Achr10G23370_001 I
GSMUA_Achr1G07330_001 Musa acuminata GSMUA_Achr1G07330_001 I
GSMUA_Achr1G07450_001 Musa acuminata GSMUA_Achr1G07450_001 I
GSMUA_Achr6G08070_001 Musa acuminata GSMUA_Achr6G08070_001 I
GSMUA_Achr7G16000_001 Musa acuminata GSMUA_Achr7G16000_001 I
LPERR01G37160 Leersia perrieri LPERR01G37160 I
LPERR11G11940 Leersia perrieri LPERR11G11940 I
MLOC_46407 Hordeum vulgare MLOC_46407 I
MLOC_52192 Hordeum vulgare MLOC_52192 I
MLOC_56814 Hordeum vulgare MLOC_56814 I
MLOC_76805 Hordeum vulgare MLOC_76805 I
MTR_1g112680 Medicago truncatula MTR_1g112680 I
MTR_3g498695 Medicago truncatula MTR_3g498695 I
OBART01G42600 Oryza barthii OBART01G42600 I
OBART02G01550 Oryza barthii OBART02G01550 I
OBART11G15260 Oryza barthii OBART11G15260 I
OGLUM01G46870 Oryza glumaepatula OGLUM01G46870 I
OGLUM02G01420 Oryza glumaepatula OGLUM02G01420 I
OGLUM11G14700 Oryza glumaepatula OGLUM11G14700 I
OMERI01G39590 Oryza meridionalis OMERI01G39590 I
OMERI02G00890 Oryza meridionalis OMERI02G00890 I
OMERI11G12580 Oryza meridionalis OMERI11G12580 I
ONIVA01G48650 Oryza nivara ONIVA01G48650 I
ONIVA02G01430 Oryza nivara ONIVA02G01430 I
ONIVA12G10770 Oryza nivara ONIVA12G10770 I
OPUNC01G41620 Oryza punctata OPUNC01G41620 I
OPUNC02G01010 Oryza punctata OPUNC02G01010 I
OPUNC11G12640 Oryza punctata OPUNC11G12640 I
ORGLA01G0363500 Oryza glaberrima ORGLA01G0363500 I
ORGLA02G0014200 Oryza glaberrima ORGLA02G0014200 I
ORGLA11G0129200 Oryza glaberrima ORGLA11G0129200 I
ORUFI01G46010 Oryza rufipogon ORUFI01G46010 I
ORUFI02G01530 Oryza rufipogon ORUFI02G01530 I
ORUFI11G16280 Oryza rufipogon ORUFI11G16280 I
OS01G0928000 Oryza sativa OS01G0928000 I
TDR Oryza sativa OS02G0120500 I
OS11G0523700 Oryza sativa OS11G0523700 I
PGSC0003DMG400008195 Solanum tuberosum PGSC0003DMG400008195 I
PGSC0003DMG400014246 Solanum tuberosum PGSC0003DMG400014246 I
PGSC0003DMG401028788 Solanum tuberosum PGSC0003DMG401028788 I
POPTR_0006s07420 Populus trichocarpa POPTR_0006s07420 I
AMS Populus trichocarpa POPTR_0009s13860 I
POPTR_0012s10780 Populus trichocarpa POPTR_0012s10780 I
POPTR_0015s11650 Populus trichocarpa POPTR_0015s11650 I
POPTR_0018s13830 Populus trichocarpa POPTR_0018s13830 I
POPTR_0018s13840 Populus trichocarpa POPTR_0018s13840 I
POPTR_0018s13850 Populus trichocarpa POPTR_0018s13850 I
PRUPE_ppa005038mg Prunus persica PRUPE_ppa005038mg I
PRUPE_ppa018220mg Prunus persica PRUPE_ppa018220mg I
PRUPE_ppa022211mg Prunus persica PRUPE_ppa022211mg I
Sb03g044660 Sorghum bicolor Sb03g044660 I
Sb04g001650 Sorghum bicolor Sb04g001650 I
Sb05g019530 Sorghum bicolor Sb05g019530 I
SELMODRAFT_119431 Selaginella moellendorffii SELMODRAFT_119431 I
SELMODRAFT_138758 Selaginella moellendorffii SELMODRAFT_138758 I
SELMODRAFT_16038 Selaginella moellendorffii SELMODRAFT_16038 I
SELMODRAFT_16039 Selaginella moellendorffii SELMODRAFT_16039 I
SELMODRAFT_430203 Selaginella moellendorffii SELMODRAFT_430203 I
SELMODRAFT_451590 Selaginella moellendorffii SELMODRAFT_451590 I
SELMODRAFT_75047 Selaginella moellendorffii SELMODRAFT_75047 I
SELMODRAFT_91237 Selaginella moellendorffii SELMODRAFT_91237 I
SELMODRAFT_94010 Selaginella moellendorffii SELMODRAFT_94010 I
Si001874m.g Setaria italica Si001874m.g I
Si006500m.g Setaria italica Si006500m.g I
Si019518m.g Setaria italica Si019518m.g I
Si026212m.g Setaria italica Si026212m.g I
Solyc03g118310.2 Solanum lycopersicum Solyc03g118310.2 I
Solyc06g068870.2 Solanum lycopersicum Solyc06g068870.2 I
Solyc08g062780.1 Solanum lycopersicum Solyc08g062780.1 I
TCM_006602 Theobroma cacao TCM_006602 I
TCM_014741 Theobroma cacao TCM_014741 I
TCM_017336 Theobroma cacao TCM_017336 I
TRAES3BF001100060CFD_g Triticum aestivum TRAES3BF001100060CFD_g I
Traes_4DS_7B0E8D459 Triticum aestivum Traes_4DS_7B0E8D459 I
Traes_6AS_4C2F64614 Triticum aestivum Traes_6AS_4C2F64614 I
Traes_6AS_66A98BA55 Triticum aestivum Traes_6AS_66A98BA55 I
Traes_7AL_ACAC47D88 Triticum aestivum Traes_7AL_ACAC47D88 I
Traes_7BL_BF5300D88 Triticum aestivum Traes_7BL_BF5300D88 I
Traes_7DL_2A7EF919F Triticum aestivum Traes_7DL_2A7EF919F I
TRIUR3_16046 Triticum urartu TRIUR3_16046 I
TRIUR3_17003 Triticum urartu TRIUR3_17003 I
VIT_01s0127g00860 Vitis vinifera VIT_01s0127g00860 I
VIT_01s0244g00130 Vitis vinifera VIT_01s0244g00130 I
VIT_03s0038g02540 Vitis vinifera VIT_03s0038g02540 I
VIT_14s0068g01200 Vitis vinifera VIT_14s0068g01200 I
VIT_17s0000g00330 Vitis vinifera VIT_17s0000g00330 I
Ca_01394 Cicer arietinum Ca_01394 I
Ca_23693 Cicer arietinum Ca_23693 I
Ca_23694 Cicer arietinum Ca_23694 I
Cla002682 Citrullus lanatus Cla002682 I
Cla003283 Citrullus lanatus Cla003283 I
Cla016068 Citrullus lanatus Cla016068 I
Cla023112 Citrullus lanatus Cla023112 I
Pm016093 Prunus mume Pm016093 I
Pm020879 Prunus mume Pm020879 I
Pm024587 Prunus mume Pm024587 I
30147.m014419 Ricinus communis 30147.m014419 I
cassava17838.valid.m1 Manihot esculenta cassava17838.valid.m1 I
cassava37254.valid.m1 Manihot esculenta cassava37254.valid.m1 I
Cucsa.010660 Cucumis sativus Cucsa.010660 I
Cucsa.088960 Cucumis sativus Cucsa.088960 I
Cucsa.134750 Cucumis sativus Cucsa.134750 I
Cucsa.156040 Cucumis sativus Cucsa.156040 I
e_gw1.25.105.1 Physcomitrella patens e_gw1.25.105.1 I
estExt_fgenesh1_pg.C_1240017 Physcomitrella patens estExt_fgenesh1_pg.C_1240017 I
estExt_fgenesh1_pg.C_1590022 Physcomitrella patens estExt_fgenesh1_pg.C_1590022 I
estExt_fgenesh1_pg.C_300202 Physcomitrella patens estExt_fgenesh1_pg.C_300202 I
estExt_Genewise1.C_510113 Physcomitrella patens estExt_Genewise1.C_510113 I
estExt_gwp_gw1.C_1820005 Physcomitrella patens estExt_gwp_gw1.C_1820005 I
fgenesh1_pg.scaffold_1000274 Physcomitrella patens fgenesh1_pg.scaffold_1000274 I
gw1.90.96.1 Physcomitrella patens gw1.90.96.1 I
mgf012194m Mimulus guttatus mgf012194m I
mgf015974m Mimulus guttatus mgf015974m I
mgf016462m Mimulus guttatus mgf016462m I
mgf018455m Mimulus guttatus mgf018455m I
mgf019723m Mimulus guttatus mgf019723m I
mgf024029m Mimulus guttatus mgf024029m I
Aquca_019_00147 Aquilegia coerulea Aquca_019_00147 I
Aquca_072_00056 Aquilegia coerulea Aquca_072_00056 I
Aquca_100_00035 Aquilegia coerulea Aquca_100_00035 I
Bostr.0556s0344 Boechera stricta Bostr.0556s0344 I
Bostr.13671s0164 Boechera stricta Bostr.13671s0164 I
Bostr.18351s0148 Boechera stricta Bostr.18351s0148 I
Cagra.0568s0207 Capsella grandiflora Cagra.0568s0207 I
Cagra.10862s0002 Capsella grandiflora Cagra.10862s0002 I
Cagra.23157s0001 Capsella grandiflora Cagra.23157s0001 I
Carubv10009081m.g Capsella rubella Carubv10009081m.g I
Carubv10016240m.g Capsella rubella Carubv10016240m.g I
Carubv10017099m.g Capsella rubella Carubv10017099m.g I
Ciclev10015052m.g Citrus clementina Ciclev10015052m.g I
Ciclev10030105m.g Citrus clementina Ciclev10030105m.g I
Eucgr.G01783 Eucalyptus grandis Eucgr.G01783 I
Eucgr.G01938 Eucalyptus grandis Eucgr.G01938 I
evm.TU.supercontig_1024.1 Carica papaya evm.TU.supercontig_1024.1 I
evm.TU.supercontig_20.95 Carica papaya evm.TU.supercontig_20.95 I
evm.TU.supercontig_70.77 Carica papaya evm.TU.supercontig_70.77 I
gene06435-v1.0-hybrid Fragaria vesca gene06435-v1.0-hybrid I
gene23715-v1.0-hybrid Fragaria vesca gene23715-v1.0-hybrid I
gene23716-v1.0-hybrid Fragaria vesca gene23716-v1.0-hybrid I
Gorai.001G275600 Gossypium raimondii Gorai.001G275600 I
Gorai.007G044800 Gossypium raimondii Gorai.007G044800 I
Gorai.007G072600 Gossypium raimondii Gorai.007G072600 I
Gorai.008G036900 Gossypium raimondii Gorai.008G036900 I
Gorai.009G002200 Gossypium raimondii Gorai.009G002200 I
Lus10032542.g Linum usitatissimum Lus10032542.g I
Lus10043199.g Linum usitatissimum Lus10043199.g I
MDP0000243628 Malus domestica MDP0000243628 I
MDP0000247912 Malus domestica MDP0000247912 I
MDP0000304669 Malus domestica MDP0000304669 I
MDP0000405748 Malus domestica MDP0000405748 I
MDP0000662999 Malus domestica MDP0000662999 I
orange1.1g011370m.g Citrus sinensis orange1.1g011370m.g I
orange1.1g045155m.g Citrus sinensis orange1.1g045155m.g I
orange1.1g047004m.g Citrus sinensis orange1.1g047004m.g I
Pavir.Ab00204 Panicum virgatum Pavir.Ab00204 I
Pavir.Ea03858 Panicum virgatum Pavir.Ea03858 I
Pavir.Eb03736 Panicum virgatum Pavir.Eb03736 I
Pavir.Hb00982 Panicum virgatum Pavir.Hb00982 I
SapurV1A.0001s2820 Salix purpurea SapurV1A.0001s2820 I
SapurV1A.0140s0240 Salix purpurea SapurV1A.0140s0240 I
SapurV1A.0140s0250 Salix purpurea SapurV1A.0140s0250 I
SapurV1A.0218s0460 Salix purpurea SapurV1A.0218s0460 I
SapurV1A.0517s0250 Salix purpurea SapurV1A.0517s0250 I
SapurV1A.0672s0200 Salix purpurea SapurV1A.0672s0200 I
SapurV1A.0774s0030 Salix purpurea SapurV1A.0774s0030 I
SapurV1A.3355s0010 Salix purpurea SapurV1A.3355s0010 I
SapurV1A.3355s0020 Salix purpurea SapurV1A.3355s0020 I
Thhalv10004059m.g Eutrema salsugineum Thhalv10004059m.g I
Thhalv10007566m.g Eutrema salsugineum Thhalv10007566m.g I
Thhalv10022620m.g Eutrema salsugineum Thhalv10022620m.g I
PK03241.1 Cannabis sativa PK03241.1 I
PK06841.1 Cannabis sativa PK06841.1 I
PK06940.1 Cannabis sativa PK06940.1 I
chr1.CM1880.50.nc Lotus japonicus chr1.CM1880.50.nc I
LjSGA_024382.1 Lotus japonicus LjSGA_024382.1 I
LjSGA_106153.1 Lotus japonicus LjSGA_106153.1 I
PDK_20s1347451g001 Phoenix dactylifera PDK_20s1347451g001 I